Failure to load imzML with units "number of detector counts"

prafols / rMSI

R MSI Tools

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Failure to load imzML with units "number of detector counts" #1

Closed AlanRace closed 7 years ago

AlanRace commented 7 years ago

The name for the unit 'MS:1000131' in the mzML ontology is "number of detector counts" (https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo), however rMSI fails to load imzML files which use this exact text as it expects "number of counts". Error included below.

Error in .controlled_loadAbort("intensity Arrays are not in number of counts units, rMSI does not support it\n", : intensity Arrays are not in number of counts units, rMSI does not support it

prafols commented 7 years ago

This has been fixed on commit 97bcc427965fc86353dca19e5d19d8234d560c1e. It will be available on next release 0.7.