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pranjalv123 / ASTRID

Fast, accurate species tree estimation.
GNU General Public License v2.0
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fatal build error: missing DistanceMatrix.hpp #1

Closed lneaves closed 4 years ago

lneaves commented 5 years ago

Hello, Following the instructions to build ASTRID2 but build terminated saying the DistanceMatrix.hpp did not exist. Details below. Any ideas on what went wrong? Thanks

user@tobyg2:~/ASTRID/build$ cmake ../src -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Java: /usr/lib/jvm/java-11-oracle/bin/java (found version "11.0.2") -- Found JNI: /usr/lib/jvm/java-11-oracle/lib/libjawt.so -- Configuring done -- Generating done -- Build files have been written to: /home/user/ASTRID/build user@tobyg2:~/ASTRID/build$ make Scanning dependencies of target Test [ 1%] Building CXX object CMakeFiles/Test.dir/FastMEInterface.cpp.o In file included from /home/linda_n/ASTRID/src/FastMEInterface.cpp:1:0: /home/user/ASTRID/src/DistanceMethods.hpp:8:10: fatal error: DistanceMatrix.hpp: No such file or directory

include 

      ^~~~~~~~~~~~~~~~~~~~

compilation terminated. CMakeFiles/Test.dir/build.make:62: recipe for target 'CMakeFiles/Test.dir/FastMEInterface.cpp.o' failed make[2]: [CMakeFiles/Test.dir/FastMEInterface.cpp.o] Error 1 CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/Test.dir/all' failed make[1]: [CMakeFiles/Test.dir/all] Error 2 Makefile:129: recipe for target 'all' failed make: *** [all] Error 2 user@tobyg2:~/ASTRID/build$

Kevin-Ziegler commented 5 years ago

I get the same error!

theo-llewellyn commented 5 years ago

same here

pschafran commented 5 years ago

Same

milag6 commented 4 years ago

Yes, same

pranjalv123 commented 4 years ago

Sorry for the long delay getting this fixed - I've updated the build system to (hopefully) get rid of these dependency issues, and precompiled executables are now automatically generated at each commit and are available at https://github.com/pranjalv123/ASTRID/releases.