Stop using the run_micro_manager.py script altogether. Use the executable micro-manager-precice instead
Make the initialize() method of the MicroManager class a public method. This is intended to better compartmentalize the definitions in the constructor and the initialization of methods and routines in the initialize() function.
Change precice-events folder to precice-profiling in the cleaning script.
The following things are changed:
run_micro_manager.pyscript altogether. Use the executablemicro-manager-preciceinsteadinitialize()method of the MicroManager class a public method. This is intended to better compartmentalize the definitions in the constructor and the initialization of methods and routines in theinitialize()function.precice-eventsfolder toprecice-profilingin the cleaning script.