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precimed / gsa-mixer

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--go-file-test/--annot-file-test require .snps.csv file to be available for baseline model #18

Closed ofrei closed 3 weeks ago

ofrei commented 3 weeks ago

This change introduced a regression : https://github.com/precimed/gsa-mixer/commit/12f54db644e2eafc3040049c4eb4cf53a7187c54 I'll check if this is already covered by unit-tests (probably it does, but I didn't re-run the tests). The fix would be to always generate a .snps.csv file for --gsa-base (but only with minimal set of columns required for computing fold enrichments)

ofrei commented 3 weeks ago

The regression was introduced after last (v2.0.1), so the issue wasn't part of any release, thus I didn't include this in CHANGELOG.