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precimed / mixer

Causal Mixture Model for GWAS summary statistics
GNU General Public License v3.0
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${SLURM_ARRAY_TASK_ID} #49

Open Ryei116 opened 2 years ago

Ryei116 commented 2 years ago

Hi,

I've tried to use mixer in Linux(CentOS 7.8), and I have a problem with ${SLURM_ARRAY_TASK_ID} in preparing reference panel and running mixer.

Our Linux system doesn't have SLURM, but I can't download it for a variety of reasons.

Could you suggest me anything about how to solve this problem without downloading SLURM?

I've read all the issues, but can't resolve this issue. Thank you in advance for your help!

ofrei commented 2 years ago

@Ryei116 MiXeR software doesn't depend on SLURM, but since it require a lot of computation resources the example files were written in a way that uses SLURM system. If you have other scheduler (e.g. QSUB) it should be straighforward to use it instead of SLURM. If you only have local nodes to run, then execution will take a really long time.

Ryei116 commented 2 years ago

Thanks a lot!