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precimed / mixer

Causal Mixture Model for GWAS summary statistics
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Download 1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.repNN.snps #65

Closed zqsha closed 1 year ago

zqsha commented 1 year ago

Hi there. I found MiXer has updated from 1.2 to 1.3. In the update log, it mentioned "f you previously downloaded 1kG reference, you need to download 20 new files called 1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.repNN.snps". But, I did not find the link to download these snp lists. Could you please specify the link for downloading the generated snp lists? Thank you so much. I really appreciated it. Best, Cain

ofrei commented 1 year ago

Hi, you fill find those files here: https://github.com/comorment/mixer/tree/main/reference/ldsc/1000G_EUR_Phase3_plink sorry about incomplete docs lacking the link!