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precimed / mixer

Causal Mixture Model for GWAS summary statistics
GNU General Public License v3.0
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Questions on updating to version 1.3.0 #67

Open yyy-nkl opened 1 year ago

yyy-nkl commented 1 year ago

I git the singularity container of mixer (https://github.com/comorment/mixer). I have installed mixer through singularity (figure shows), but when I run mix.py, the log file noted the version was still 1.2.0. Why didn't I got the update? What should I do to update to version 1.3.0? image

singularity shell /mixer/src/mixer.sif python /tools/mixer/precimed/mixer.py fit1 \ --trait1-file $EPI/GrimAge_qc_noMHC.csv.gz \ --out $EPIOUT/GrimAge_qc_noMHC.fit.rep${SLURM_ARRAY_TASK_ID} \ --extract /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep${SLURM_ARRAY_TASK_ID}.snps \ --bim-file /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim \ --ld-file /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld

Thank you in advance for help!

pinliang168 commented 1 year ago

Would you tell me have you solved this problem and how did you solve？I‘m meeting the same problem

EleniFri commented 8 months ago

Any updates on this? I have the same issue...