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precimed / mixer

Causal Mixture Model for GWAS summary statistics
GNU General Public License v3.0
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try to fit `fit1` model, be killed #76

Open llalluan opened 1 year ago

llalluan commented 1 year ago

Hi, Guys, I got a killed massage when I ran: python3 <MIXER_ROOT>/precimed/mixer.py fit1 \ --trait1-file SSGAC_EDU_2018_no23andMe_noMHC.csv.gz \ --out SSGAC_EDU_2018_no23andMe_noMHC.fit.rep${SLURM_ARRAY_TASK_ID} \ --extract LDSR/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep${SLURM_ARRAY_TASK_ID}.snps \ --bim-file LDSR/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim \ --ld-file LDSR/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld \ --lib <MIXER_ROOT>/src/build/lib/libbgmg.so \ Does anyone know the reason? I think it might be due to being out of memory, but I don't know how to constrain the memory for mixer.py so it could run safely. sometimes it is killed during '--diffevo-fast-repeat', sometimes killed after 'INFO:root:log_message(fit_type==neldermead...)'

shenlan17 commented 1 year ago

maybe because insufficient memory