I am running MiXeR on a Unix-based HPC server in my conda environment. All the previous steps seem to run without problem.
However, when I tried to run the combine and visualisation parts, I only seemed to get some but not all of the plots. Specifically, the density plots are missing.
I am wondering if anyone has come across similar issues and were able to debug this? Any help or suggestion would be deeply appreciated!
Below are my codes, which I believe I constructed following the guide:
I am running MiXeR on a Unix-based HPC server in my conda environment. All the previous steps seem to run without problem.
However, when I tried to run the combine and visualisation parts, I only seemed to get some but not all of the plots. Specifically, the density plots are missing. I am wondering if anyone has come across similar issues and were able to debug this? Any help or suggestion would be deeply appreciated!
Below are my codes, which I believe I constructed following the guide:
# trait1 vs trait2 bivariate results combine and visualise python3 ${mixer}/mixer_figures.py combine \ --json ${rep}/t1t2_fit_rep@.json \ --out ${com}/t1t2_bi.fit python3 ${mixer}/mixer_figures.py combine \ --json ${rep}/t1t2_test_rep@.json \ --out ${com}/t1t2_bi.test python3 ${mixer}/mixer_figures.py two \ --json-fit ${com}/t1t2_bi.fit.json \ --json-test ${com}/t1t2_bi.test.json \ --out ${com}/t1t2_bi_vis --statistic mean std