Hi,
I'm running univariate analyses using MIXER, and my code looks like this. However, I've noticed that a single for loop is taking five hours or even longer to complete, I don’t know why, I'm not sure if it's because I did something wrong.
for i in $(seq 1 20); dopython3.8 mixer/mixer-master/precimed/mixer.py fit1 --trait1-file mixer/data/a0001.csv.gz --out result/a0001.fit.rep$i --extract mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep$i.snps --bim-file mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim --ld-file mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld --lib mixer/mixer-master/src/build/lib/libbgmg.sodone
Hi, I'm running univariate analyses using MIXER, and my code looks like this. However, I've noticed that a single for loop is taking five hours or even longer to complete, I don’t know why, I'm not sure if it's because I did something wrong.
for i in $(seq 1 20); dopython3.8 mixer/mixer-master/precimed/mixer.py fit1 --trait1-file mixer/data/a0001.csv.gz --out result/a0001.fit.rep$i --extract mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep$i.snps --bim-file mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim --ld-file mixer/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld --lib mixer/mixer-master/src/build/lib/libbgmg.sodone