Open rezarahman12 opened 1 year ago
Hi Not sure what's wrong, perhaps you are using another version of Matlab that what we tested pleiofrd with. Could you try comment out the line where this fails? The line sets some fonts for Manhattan plot so it's optional. Or, comment out the whole mantlhattan plot section and make them using some other tool, e.g. qqman in R
Dear @ofrei Thank you. Yes, I obtained the output except manhattan plot. So, according to your advice I comment out Manhattan plot section in plot_Manhattan.m file. It ran without any error. Thanks for your quick response. I would like to ask for another help on converting the result.mat file into csv. I tried to follow your instruction but for me it is a bit difficult to implement because I am not good at programming languages. Could you please give me a script that you used to convert the result.mat file into csv. I prepared 1 but need to be edited because I did by some google search. Could you please help me on the below to get desired results. I do highly appreciate your time and help. Best regards Reza
****code**** from scipy.io import loadmat data=loadmat("/scratch/project_mnt/S0077/pleiofdr/results/result.mat") x=data["mafvec"] print(x) print(type(x))
import pandas as pd df = pd.DataFrame(x)
print('DataFrame:\n', df)
csv_data = df.to_csv() print('\nCSV String:\n', csv_data)
Dear Developer Thank you for developing this software. I'm trying to run example datasets given pleiofdr. I'm getting an error regarding Manhattan plot generation stage.
Below is my config file-
Could you please help me to avoid the error?
Kind regards Reza