Open ofrei opened 6 years ago
Call:
./sumstats.py mat \
--force \
--sumstats /space/syn03/1/data/GWAS/SUMSTAT/STD/23andMe_AGREE_2016.csv.gz \
--keep-all-cols \
--ref /space/syn03/1/data/oleksandr/SynGen2/11015833/all_chromosomes_multiallelic_replaced_with_AT.ref \
--out /space/syn03/1/data/oleksandr/SynGen2/11015833/SUMSTAT/23andMe_AGREE_2016.mat
Beginning analysis at Thu Jan 25 08:14:55 2018 by oleksandr, host pip31.ucsd.edu
This problem is specific to 23andme sumstats, and happens only in 11M SNPs template. I'll leave it for now - nothing urgent to worry about.