define pattern(s) for organization files on server: fix to DESTINATION_PATH line 37

[proccaserra]

https://github.com/precisiontox/Globus_automation/blob/main/uob-uhei-sync.sh#L37

Discussion needed: @RJMW @JCGonzS

Rationale: define data store organization and url patterns for data files so they can be referenced in the metafiles

[M-R-JONES]

We currently have a configuration as follows:

• PrecisionTox/

  • Studies/
    • 01_Pilot/
      • 001_UOB_D_Dmagna/
        • [data directory]
        • [results directory]
      • 002_IUB_F_Dmelanogaster/
        • [data directory]
        • [results directory]
      • 003_IUB_M_Dmelanogaster/
        • [data directory]
        • [results directory]
      • 004_KIT_R_Drerio/
        • [data directory]
        • [results directory]
      • 005_KIT_G_HepG2/
        • [data directory]
        • [results directory]
      • 006_IUB_E_Celegans/
        • [data directory]
        • [results directory]
      • 007_WF_X_Xlaevis/
        • [data directory]
        • [results directory]
    • 02_50chem/
    • 03_150chem/
    • ...

• [data directory] data/

  • HILIC_POS/
    • raw/
    • mzml/
  • LIPIDS_POS/
    • raw/
    • mzml/
  • metadata/
    • metadata.csv <- contains metadata for LC-MS sequence and associated samples

• [results directory] results/

  • xlsx/
    • HILIC_POS.xlsx <- files containing data matrices for metabolomics analyses. Also includes worksheet outlining LC-MS sequence and associated metadata.
    • LIPIDS_POS.xlsx <- files containing data matrices for metabolomics analyses. Also includes worksheet outlining LC-MS sequence and associated metadata.