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preprocessed-connectomes-project / abide

ABIDE Preprocessed Initiative
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Link to freesurfer data on S3 #10

Closed r03ert0 closed 9 years ago

r03ert0 commented 9 years ago

Hello, I tried this link to get data from S3: https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Outputs/freesurfer/5.1/50002/surf/lh.pial But I get an error. Am I doing something wrong?

Here's the error:

<Error>
<Code>NoSuchKey</Code>
<Message>The specified key does not exist.</Message>
<Key>data/Projects/ABIDE_Initiative/Outputs/freesurfer/5.1/50002/surf/lh.pial</Key>
<RequestId>809A3F0391F8BD8E</RequestId>
<HostId>fYcV661vrZd4jjhRa5Qo5bHLiTxww8+qsiBoe4t5CMyNFRCUzPT4in+QPSqS+CmhRRMphsUS6cQ=</HostId>
</Error>
r03ert0 commented 9 years ago

I found the issue. The correct Subject ID should include the abbreviation of the scanning centre, and the leading zeros, like this:

https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Outputs/freesurfer/5.1/Pitt_0050002/surf/lh.pial

Probably the documentation has to be updated.

stymy commented 9 years ago

Hi Roberto,

The documentation is unclear, but the [File ID] column of the summary spreadsheet* should be useful to construct the download link.

The link to the python download script is outdated, but a new version exists here: https://github.com/preprocessed-connectomes-project/abide/blob/master/download_abide_preproc.py

old version: https://github.com/ccraddock/abide/blob/master/get_s3_paths.py

*available here: https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed1.csv

r03ert0 commented 9 years ago

thank you! I've managed to download all the .white and .pial surfaces. More news soon :) cheers, roberto

On Tue, Nov 10, 2015 at 11:16 PM, Aimi Watanabe notifications@github.com wrote:

Hi Roberto,

The documentation is unclear, but the [File ID] column of the summary spreadsheet* should be useful to construct the download link.

The link to the python download script is outdated, but a new version exists here:

https://github.com/preprocessed-connectomes-project/abide/blob/master/download_abide_preproc.py

old version: https://github.com/ccraddock/abide/blob/master/get_s3_paths.py

*available here: https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed1.csv

— Reply to this email directly or view it on GitHub https://github.com/preprocessed-connectomes-project/abide/issues/10#issuecomment-155585214 .