When I run following command line with ntthal "ANY" mode, the result seems unreasonable.
./ntthal -a ANY -mv 50 -dv 1.5 -n 0.6 -d 50 -s1 ATTAGGAACCCACTCCCAAGATAAC -s2 GTTATCTAGGGAGTGGGTTTCTGAT
Calculated thermodynamical parameters for dimer: dS = -285.288 dH = -102700 dG = -14218 t = 46.3398
SEQ ATT G AAGATAAC
SEQ AG AACCCACTCCC
STR TC TTGGGTGAGGG
STR TAG T ATCTATTG
but in fact, it shoud be like this:
SEQ ATT G A
SEQ AG AACCCACTCCC AGATAAC
STR TC TTGGGTGAGGG TCTATTG
STR TAG T A
And I found that the value of "stackint2Enthalpies[3][0][0][0]" is "inf" which should be illogical. and it may lead to the unreasonable result above.
Both v2.5.0 and the latest version have been tested.
When I run following command line with ntthal "ANY" mode, the result seems unreasonable.
./ntthal -a ANY -mv 50 -dv 1.5 -n 0.6 -d 50 -s1 ATTAGGAACCCACTCCCAAGATAAC -s2 GTTATCTAGGGAGTGGGTTTCTGATCalculated thermodynamical parameters for dimer: dS = -285.288 dH = -102700 dG = -14218 t = 46.3398but in fact, it shoud be like this:
And I found that the value of "stackint2Enthalpies[3][0][0][0]" is "inf" which should be illogical. and it may lead to the unreasonable result above. Both v2.5.0 and the latest version have been tested.
Best regards, Huaping Zeng