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princeton-vl / infinigen

Infinite Photorealistic Worlds using Procedural Generation
https://infinigen.org
BSD 3-Clause "New" or "Revised" License
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Bump the python-packages group with 2 updates #216

Closed dependabot[bot] closed 2 months ago

dependabot[bot] commented 2 months ago

Bumps the python-packages group with 2 updates: scikit-image and numpy.

Updates scikit-image from 0.19.3 to 0.23.1

Release notes

Sourced from scikit-image's releases.

v0.23.1

scikit-image 0.23.1

We're happy to announce the release of scikit-image 0.23.1!

[!NOTE] Due to an issue with the CI system scikit-image 0.23.0 was never released. This release is identical to what 0.23.0 would have been other than the CI fix and the version number.

Highlights

  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

New Features

  • Add new intensity_std property to skimage.measure.regionprops which computes the standard deviation of the intensity in a region (#6712).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add functions mirror_footprint and pad_footprint to skimage.morphology (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add new parameter spacing to segmentation.expand_labels to support anisotropic images (#7080).

API Changes

  • Drop support for Python 3.9 (#7217).
  • Parameters shift_x and shift_y in skimage.morphology.erosion and skimage.morphology.dilation are deprecated. Use pad_footprint or modify the footprint manually instead (#6695).
  • Remove unexpected value scaling in skimage.morphology.skeletonize_3d for non-binary input images. skeletonize_3d now always returns a binary array like similar functions (#7095).
  • Deprecate function skimage.feature.plot_matches in favor of skimage.feature.plot_matched_features (#7255).
  • Deprecate skimage.morphology.skeletonize_3d in favor of just skimage.morphology.skeletonize (#7094).
  • Deprecate parameter output in skimage.filters.gaussian; use out instead (#7225).
  • Change the default value of the parameters shift_x, shift_y and shift_z from False to 0 in the skimage.filters.rank functions. This has not impact on the results. Warn in case boolean shifts are provided from now on (#7320).

Performance

  • Add lazy loading to skimage.metrics module (#7211).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

Bug Fixes

  • Add exception to avoid surprising result when image is too small for the given parameters in skimage.feature.hog (#7153).
  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Avoid a TypeError in skimage.registration.phase_cross_correlation when the real-time shift cannot be determined (disambiguate=True). Display a warning instead (#7259).
  • Fix logic in skimage.graph.pixel_graph which raised a TypeError when the parameter edge_function was provided without a mask (#7310).
  • Ensure cache stays empty when cache=False is passed to skimage.measure.regionprops (#7333).

Documentation

  • Update instructions for updating dev environment (#7160).

... (truncated)

Commits


Updates numpy from 1.26.2 to 1.26.4

Release notes

Sourced from numpy's releases.

v1.26.4

NumPy 1.26.4 Release Notes

NumPy 1.26.4 is a maintenance release that fixes bugs and regressions discovered after the 1.26.3 release. The Python versions supported by this release are 3.9-3.12. This is the last planned release in the 1.26.x series.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Elliott Sales de Andrade
  • Lucas Colley +
  • Mark Ryan +
  • Matti Picus
  • Nathan Goldbaum
  • Ola x Nilsson +
  • Pieter Eendebak
  • Ralf Gommers
  • Sayed Adel
  • Sebastian Berg
  • Stefan van der Walt
  • Stefano Rivera

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #25323: BUG: Restore missing asstr import
  • #25523: MAINT: prepare 1.26.x for further development
  • #25539: BUG: numpy.array_api: fix linalg.cholesky upper decomp...
  • #25584: CI: Bump azure pipeline timeout to 120 minutes
  • #25585: MAINT, BLD: Fix unused inline functions warnings on clang
  • #25599: BLD: include fix for MinGW platform detection
  • #25618: TST: Fix test_numeric on riscv64
  • #25619: BLD: fix building for windows ARM64
  • #25620: MAINT: add newaxis to __all__ in numpy.array_api
  • #25630: BUG: Use large file fallocate on 32 bit linux platforms
  • #25643: TST: Fix test_warning_calls on Python 3.12
  • #25645: TST: Bump pytz to 2023.3.post1
  • #25658: BUG: Fix AVX512 build flags on Intel Classic Compiler
  • #25670: BLD: fix potential issue with escape sequences in __config__.py
  • #25718: CI: pin cygwin python to 3.9.16-1 and fix typing tests [skip...
  • #25720: MAINT: Bump cibuildwheel to v2.16.4
  • #25748: BLD: unvendor meson-python on 1.26.x and upgrade to meson-python...
  • #25755: MAINT: Include header defining backtrace
  • #25756: BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)

... (truncated)

Commits
  • 9815c16 Merge pull request #25770 from charris/prepare-1.26.4
  • 114ed25 REL: Prepare for the NumPy 1.26.4 release
  • 2fae4d3 Merge pull request #25323 from stefanor/import-asstr
  • ce89a0a Merge pull request #25756 from charris/backport-24711
  • f62dfc6 Merge pull request #25755 from charris/backport-25709
  • fee88ab BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)
  • 659be68 MAINT: Include header defining backtrace
  • 837cd38 Merge pull request #25748 from rgommers/unvendor-mesonpython
  • f984240 CI: upgrade cibuildwheel from 2.16.4 to 2.16.5 [wheel build]
  • 3548f9d BLD: unvendor meson-python [wheel build]
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 months ago

Superseded by #222.