princeton-vl / infinigen

Infinite Photorealistic Worlds using Procedural Generation
https://infinigen.org
BSD 3-Clause "New" or "Revised" License
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Bump the python-packages group across 1 directory with 3 updates #240

Closed dependabot[bot] closed 1 week ago

dependabot[bot] commented 1 month ago

Bumps the python-packages group with 3 updates in the / directory: landlab, scikit-image and numpy.

Updates landlab from 2.7.0 to 2.8.0

Changelog

Sourced from landlab's changelog.

2.8.0 (2024-05-12)

New Components


- Added new component :class:`~.ConcentrationTrackerForDiffusion`
  for tracking hillslope sediment properties. (`[#1662](https://github.com/landlab/landlab/issues/1662) <https://github.com/landlab/landlab/issues/1662>`_)
- Added new component :class:`~.MassWastingRunout`
  for predicting the hazard extent, sediment transport and topographic change associated with the runout of a landslide. (`[#1830](https://github.com/landlab/landlab/issues/1830) <https://github.com/landlab/landlab/issues/1830>`_)

New Features


- Fixed the Radiation component by computing fields with ASCE standard formulas, added
  increased test coverage for both field computations and standard unit testing.
  Min, max, and avg daily temp are also three optional, newly added
  user-defined arguments for the component. (`[#1755](https://github.com/landlab/landlab/issues/1755) &lt;https://github.com/landlab/landlab/issues/1755&gt;`_)
- Added a new grid type, :class:`~.IcosphereGlobalGrid` (plus underlying graph
  machinery, etc.). (`[#1808](https://github.com/landlab/landlab/issues/1808) &lt;https://github.com/landlab/landlab/issues/1808&gt;`_)
- Added a new function, calc_net_face_flux_at_cell, that computes the
  net flux of a quantity into each of a RasterModelGrid's cells. This
  function uses openmp to parallelize its calculations. (`[#1900](https://github.com/landlab/landlab/issues/1900) &lt;https://github.com/landlab/landlab/issues/1900&gt;`_)
- Added a new *vtk* writer, ``landlab.io.legacy_vtk.dump`` that is
  able to write *Landlab* grids that have three spatial coordinates.
  This function is also able to write both the main grid (*nodes* and
  *patches*) as well as the dual grid (*corners* and *cells*). (`[#1932](https://github.com/landlab/landlab/issues/1932) &lt;https://github.com/landlab/landlab/issues/1932&gt;`_)

Bug Fixes
`````````

- Fixed a bug when ordering links at patches with patches composed of varying
  numbers of links. (`[#1807](https://github.com/landlab/landlab/issues/1807) &lt;https://github.com/landlab/landlab/issues/1807&gt;`_)
- Fixed a bug where SpaceLargeScaleEroder deviates from analytical solution for mixed bedrock-alluvial river in a portion of the parameter space. (`[#1901](https://github.com/landlab/landlab/issues/1901) &lt;https://github.com/landlab/landlab/issues/1901&gt;`_)
- Fixed a bug that caused a ``ModuleNotFoundError`` for *pkg_config* on
  Python 3.12. (`[#1927](https://github.com/landlab/landlab/issues/1927) &lt;https://github.com/landlab/landlab/issues/1927&gt;`_)

Documentation Enhancements
</code></pre>
<ul>
<li>Update list of publications in USEDBY.rst. (<code>[#1928](https://github.com/landlab/landlab/issues/1928) &lt;https://github.com/landlab/landlab/issues/1928&gt;</code>_)</li>
</ul>
<p>Other Changes and Additions</p>
<pre><code>
- Removed the broken ``map_link_vector_to_nodes`` method from
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/landlab/landlab/commit/62fa4539b223b7ccefcff5c87adf7834c12265f1"><code>62fa453</code></a> Preparing release 2.8.0</li>
<li><a href="https://github.com/landlab/landlab/commit/2f9a9cdb12eba2167f63daf081d6ce25f3b57670"><code>2f9a9cd</code></a> drop windows 32bit; update cibuildwheel</li>
<li><a href="https://github.com/landlab/landlab/commit/2c900a3b1d8b38e73f2d90ce33e7e8c2d7720b8b"><code>2c900a3</code></a> Merge branch 'master' into mcflugen/prepare-for-v2.8</li>
<li><a href="https://github.com/landlab/landlab/commit/26d7662a05e5f73eb0a3ab4a8afc7dd5d8c1f8df"><code>26d7662</code></a> Merge pull request <a href="https://redirect.github.com/landlab/landlab/issues/1838">#1838</a> from landlab/gt/icosphere-grid</li>
<li><a href="https://github.com/landlab/landlab/commit/ed4a7bb45b959004089a01096d1833149c770175"><code>ed4a7bb</code></a> add a link to the docs</li>
<li><a href="https://github.com/landlab/landlab/commit/71d86e5f9eb45c4c8453c35b7d6eed5be1a51d2c"><code>71d86e5</code></a> make landlab.util.geometry a module</li>
<li><a href="https://github.com/landlab/landlab/commit/13c13a40c3beb16368f0bd151a08af3e4178b200"><code>13c13a4</code></a> remove usages of to_vtk in the notebooks</li>
<li><a href="https://github.com/landlab/landlab/commit/9bb7e7716f9fc0bc8812a524349144aed92def12"><code>9bb7e77</code></a> remove to_vtk method</li>
<li><a href="https://github.com/landlab/landlab/commit/a3c5d72c15d97a092a46fae4d453ba4317140539"><code>a3c5d72</code></a> use landlab.io.legacy_vtk functions for vtk output</li>
<li><a href="https://github.com/landlab/landlab/commit/9c5df3f453df5860e5cc68724986831da95f8883"><code>9c5df3f</code></a> add vtk.dump alongside to_vtk</li>
<li>Additional commits viewable in <a href="https://github.com/landlab/landlab/compare/v2.7.0...v2.8.0">compare view</a></li>
</ul>
</details>

<br />
Updates `scikit-image` from 0.19.3 to 0.23.2
Release notes

Sourced from scikit-image's releases.

v0.23.2

scikit-image 0.23.2

We're happy to announce the release of scikit-image 0.23.2!

Bug Fixes

  • Make sure skimage.util.img_as_ubyte supports the edge case where dtype('uint64').type of the provided image is np.ulonglong instead of np.uint64 (#7392).

Documentation

  • Add date to 0.23.1 release notes (#7384).
  • Fix docstring of connectivity parameter in skimage.segmentation.watershed (#7360).

Infrastructure

  • Ignore Sphinx warning about unpickable cache (#7400).
  • Simplify instructions on changelist in PR template (#7401).

Maintenance

  • Use numpy.inf instead of deprecated numpy.infty (#7386).
  • Update Ruff config (#7387).
  • Update matrix and names of Azure pipelines configuration (#7390).
  • Use upload- and download-artifact v4 (#7389).
  • Ignore arch specific cast warnings originating from astype in tests (#7393).
  • Update link to numpydoc example.py (#7395).

Contributors

4 authors added to this release (alphabetically):

4 reviewers added to this release (alphabetically):

These lists are automatically generated, and may not be complete or may contain duplicates.

v0.23.2rc1

scikit-image 0.23.2rc1

[!IMPORTANT]

... (truncated)

Commits

Updates `numpy` from 1.26.2 to 1.26.4
Release notes

Sourced from numpy's releases.

v1.26.4

NumPy 1.26.4 Release Notes

NumPy 1.26.4 is a maintenance release that fixes bugs and regressions discovered after the 1.26.3 release. The Python versions supported by this release are 3.9-3.12. This is the last planned release in the 1.26.x series.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Elliott Sales de Andrade
  • Lucas Colley +
  • Mark Ryan +
  • Matti Picus
  • Nathan Goldbaum
  • Ola x Nilsson +
  • Pieter Eendebak
  • Ralf Gommers
  • Sayed Adel
  • Sebastian Berg
  • Stefan van der Walt
  • Stefano Rivera

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #25323: BUG: Restore missing asstr import
  • #25523: MAINT: prepare 1.26.x for further development
  • #25539: BUG: numpy.array_api: fix linalg.cholesky upper decomp...
  • #25584: CI: Bump azure pipeline timeout to 120 minutes
  • #25585: MAINT, BLD: Fix unused inline functions warnings on clang
  • #25599: BLD: include fix for MinGW platform detection
  • #25618: TST: Fix test_numeric on riscv64
  • #25619: BLD: fix building for windows ARM64
  • #25620: MAINT: add newaxis to __all__ in numpy.array_api
  • #25630: BUG: Use large file fallocate on 32 bit linux platforms
  • #25643: TST: Fix test_warning_calls on Python 3.12
  • #25645: TST: Bump pytz to 2023.3.post1
  • #25658: BUG: Fix AVX512 build flags on Intel Classic Compiler
  • #25670: BLD: fix potential issue with escape sequences in __config__.py
  • #25718: CI: pin cygwin python to 3.9.16-1 and fix typing tests [skip...
  • #25720: MAINT: Bump cibuildwheel to v2.16.4
  • #25748: BLD: unvendor meson-python on 1.26.x and upgrade to meson-python...
  • #25755: MAINT: Include header defining backtrace
  • #25756: BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)

... (truncated)

Commits
  • 9815c16 Merge pull request #25770 from charris/prepare-1.26.4
  • 114ed25 REL: Prepare for the NumPy 1.26.4 release
  • 2fae4d3 Merge pull request #25323 from stefanor/import-asstr
  • ce89a0a Merge pull request #25756 from charris/backport-24711
  • f62dfc6 Merge pull request #25755 from charris/backport-25709
  • fee88ab BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)
  • 659be68 MAINT: Include header defining backtrace
  • 837cd38 Merge pull request #25748 from rgommers/unvendor-mesonpython
  • f984240 CI: upgrade cibuildwheel from 2.16.4 to 2.16.5 [wheel build]
  • 3548f9d BLD: unvendor meson-python [wheel build]
  • Additional commits viewable in compare view

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dependabot[bot] commented 1 week ago

Superseded by #256.