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princeton-vl / infinigen

Infinite Photorealistic Worlds using Procedural Generation
https://infinigen.org
BSD 3-Clause "New" or "Revised" License
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Bump the python-packages group across 1 directory with 3 updates #256

Closed dependabot[bot] closed 2 days ago

dependabot[bot] commented 1 week ago

Bumps the python-packages group with 3 updates in the / directory: landlab, scikit-image and numpy.

Updates landlab from 2.7.0 to 2.8.0

Changelog

Sourced from landlab's changelog.

2.8.0 (2024-05-12)

New Components


- Added new component :class:`~.ConcentrationTrackerForDiffusion`
  for tracking hillslope sediment properties. (`[#1662](https://github.com/landlab/landlab/issues/1662) <https://github.com/landlab/landlab/issues/1662>`_)
- Added new component :class:`~.MassWastingRunout`
  for predicting the hazard extent, sediment transport and topographic change associated with the runout of a landslide. (`[#1830](https://github.com/landlab/landlab/issues/1830) <https://github.com/landlab/landlab/issues/1830>`_)

New Features



- Fixed the Radiation component by computing fields with ASCE standard formulas, added
  increased test coverage for both field computations and standard unit testing.
  Min, max, and avg daily temp are also three optional, newly added
  user-defined arguments for the component. (`[#1755](https://github.com/landlab/landlab/issues/1755) &lt;https://github.com/landlab/landlab/issues/1755&gt;`_)
- Added a new grid type, :class:`~.IcosphereGlobalGrid` (plus underlying graph
  machinery, etc.). (`[#1808](https://github.com/landlab/landlab/issues/1808) &lt;https://github.com/landlab/landlab/issues/1808&gt;`_)
- Added a new function, calc_net_face_flux_at_cell, that computes the
  net flux of a quantity into each of a RasterModelGrid's cells. This
  function uses openmp to parallelize its calculations. (`[#1900](https://github.com/landlab/landlab/issues/1900) &lt;https://github.com/landlab/landlab/issues/1900&gt;`_)
- Added a new *vtk* writer, ``landlab.io.legacy_vtk.dump`` that is
  able to write *Landlab* grids that have three spatial coordinates.
  This function is also able to write both the main grid (*nodes* and
  *patches*) as well as the dual grid (*corners* and *cells*). (`[#1932](https://github.com/landlab/landlab/issues/1932) &lt;https://github.com/landlab/landlab/issues/1932&gt;`_)

Bug Fixes
`````````

- Fixed a bug when ordering links at patches with patches composed of varying
  numbers of links. (`[#1807](https://github.com/landlab/landlab/issues/1807) &lt;https://github.com/landlab/landlab/issues/1807&gt;`_)
- Fixed a bug where SpaceLargeScaleEroder deviates from analytical solution for mixed bedrock-alluvial river in a portion of the parameter space. (`[#1901](https://github.com/landlab/landlab/issues/1901) &lt;https://github.com/landlab/landlab/issues/1901&gt;`_)
- Fixed a bug that caused a ``ModuleNotFoundError`` for *pkg_config* on
  Python 3.12. (`[#1927](https://github.com/landlab/landlab/issues/1927) &lt;https://github.com/landlab/landlab/issues/1927&gt;`_)

Documentation Enhancements
</code></pre>
<ul>
<li>Update list of publications in USEDBY.rst. (<code>[#1928](https://github.com/landlab/landlab/issues/1928) &lt;https://github.com/landlab/landlab/issues/1928&gt;</code>_)</li>
</ul>
<p>Other Changes and Additions</p>
<pre><code>
- Removed the broken ``map_link_vector_to_nodes`` method from
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/landlab/landlab/commit/62fa4539b223b7ccefcff5c87adf7834c12265f1"><code>62fa453</code></a> Preparing release 2.8.0</li>
<li><a href="https://github.com/landlab/landlab/commit/2f9a9cdb12eba2167f63daf081d6ce25f3b57670"><code>2f9a9cd</code></a> drop windows 32bit; update cibuildwheel</li>
<li><a href="https://github.com/landlab/landlab/commit/2c900a3b1d8b38e73f2d90ce33e7e8c2d7720b8b"><code>2c900a3</code></a> Merge branch 'master' into mcflugen/prepare-for-v2.8</li>
<li><a href="https://github.com/landlab/landlab/commit/26d7662a05e5f73eb0a3ab4a8afc7dd5d8c1f8df"><code>26d7662</code></a> Merge pull request <a href="https://redirect.github.com/landlab/landlab/issues/1838">#1838</a> from landlab/gt/icosphere-grid</li>
<li><a href="https://github.com/landlab/landlab/commit/ed4a7bb45b959004089a01096d1833149c770175"><code>ed4a7bb</code></a> add a link to the docs</li>
<li><a href="https://github.com/landlab/landlab/commit/71d86e5f9eb45c4c8453c35b7d6eed5be1a51d2c"><code>71d86e5</code></a> make landlab.util.geometry a module</li>
<li><a href="https://github.com/landlab/landlab/commit/13c13a40c3beb16368f0bd151a08af3e4178b200"><code>13c13a4</code></a> remove usages of to_vtk in the notebooks</li>
<li><a href="https://github.com/landlab/landlab/commit/9bb7e7716f9fc0bc8812a524349144aed92def12"><code>9bb7e77</code></a> remove to_vtk method</li>
<li><a href="https://github.com/landlab/landlab/commit/a3c5d72c15d97a092a46fae4d453ba4317140539"><code>a3c5d72</code></a> use landlab.io.legacy_vtk functions for vtk output</li>
<li><a href="https://github.com/landlab/landlab/commit/9c5df3f453df5860e5cc68724986831da95f8883"><code>9c5df3f</code></a> add vtk.dump alongside to_vtk</li>
<li>Additional commits viewable in <a href="https://github.com/landlab/landlab/compare/v2.7.0...v2.8.0">compare view</a></li>
</ul>
</details>

<br />



Updates `scikit-image` from 0.19.3 to 0.23.2


Release notes

Sourced from scikit-image's releases.




v0.23.2


scikit-image 0.23.2


We're happy to announce the release of scikit-image 0.23.2!


Bug Fixes


    

  • Make sure skimage.util.img_as_ubyte supports the edge case where dtype('uint64').type of the provided image is np.ulonglong instead of np.uint64 (#7392).
    • 



Documentation


    

  • Add date to 0.23.1 release notes (#7384).
    • 

  • Fix docstring of connectivity parameter in skimage.segmentation.watershed (#7360).
    • 



Infrastructure


    

  • Ignore Sphinx warning about unpickable cache (#7400).
    • 

  • Simplify instructions on changelist in PR template (#7401).
    • 



Maintenance


    

  • Use numpy.inf instead of deprecated numpy.infty (#7386).
    • 

  • Update Ruff config (#7387).
    • 

  • Update matrix and names of Azure pipelines configuration (#7390).
    • 

  • Use upload- and download-artifact v4 (#7389).
    • 

  • Ignore arch specific cast warnings originating from astype in tests (#7393).
    • 

  • Update link to numpydoc example.py (#7395).
    • 



Contributors


4 authors added to this release (alphabetically):



4 reviewers added to this release (alphabetically):



These lists are automatically generated, and may not be complete or may contain duplicates.


v0.23.2rc1


scikit-image 0.23.2rc1




[!IMPORTANT]







... (truncated)





Commits






Updates `numpy` from 1.26.2 to 2.0.0


Release notes

Sourced from numpy's releases.




v2.0.0


NumPy 2.0.0 Release Notes


NumPy 2.0.0 is the first major release since 2006. It is the result of
11 months of development since the last feature release and is the work
of 212 contributors spread over 1078 pull requests. It contains a large
number of exciting new features as well as changes to both the Python
and C APIs.


This major release includes breaking changes that could not happen in a
regular minor (feature) release - including an ABI break, changes to
type promotion rules, and API changes which may not have been emitting
deprecation warnings in 1.26.x. Key documents related to how to adapt to
changes in NumPy 2.0, in addition to these release notes, include:



Highlights


Highlights of this release include:


    

  • New features:

      

    • A new variable-length string dtype, numpy.dtypes.StringDType and a new
numpy.strings namespace with performant ufuncs for string operations,
      • 

    • Support for float32 and longdouble in all
numpy.fft functions,
      • 

    • Support for the array API standard in the main numpy
namespace.
      • 

    

    • 

  • Performance improvements:

      

    • Sorting functions sort, argsort,
partition, argpartition have been
accelerated through the use of the Intel x86-simd-sort and
Google Highway libraries, and may see large (hardware-specific)
speedups,
      • 

    • macOS Accelerate support and binary wheels for macOS >=14, with
significant performance improvements for linear algebra
operations on macOS, and wheels that are about 3 times smaller,
      • 

    • numpy.char fixed-length string operations have
been accelerated by implementing ufuncs that also support
numpy.dtypes.StringDType in addition to the
fixed-length string dtypes,
      • 

    • A new tracing and introspection API,
numpy.lib.introspect.opt_func_info, to determine
which hardware-specific kernels are available and will be
dispatched to.
      • 

    • numpy.save now uses pickle protocol version 4 for saving
arrays with object dtype, which allows for pickle objects larger
than 4GB and improves saving speed by about 5% for large arrays.
      • 

    

    • 

  • Python API improvements:
    • 






... (truncated)





Commits

    

  • 1d49c7f Merge pull request #26698 from charris/prepare-2.0.0
    • 

  • 2103511 DOC: Remove duplicate in author list.
    • 

  • db8030e BUG: Change cibuildwheel version [wheel build]
    • 

  • 1a68264 REL: Prepare for the NumPy 2.0.0 release [wheel build]
    • 

  • c8665ba Merge pull request #26696 from charris/backport-26582
    • 

  • 103f4dd Merge pull request #26697 from charris/backport-25963
    • 

  • c193dcd Merge pull request #26695 from charris/backport-26667
    • 

  • 8fa8191 BUG: Fix bug in numpy.pad() (#25963)
    • 

  • ece3559 BUG: weighted nanpercentile, nanquantile and  multi-dim q (#26582)
    • 

  • b31e195 BUG: Adds asanyarray to start of linalg.cross (#26667)
    • 

  • Additional commits viewable in compare view
    • 







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dependabot[bot] commented 2 days ago

Looks like these dependencies are updatable in another way, so this is no longer needed.