princeton-vl / infinigen

Infinite Photorealistic Worlds using Procedural Generation
https://infinigen.org
BSD 3-Clause "New" or "Revised" License
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Bump the python-packages group across 1 directory with 4 updates #264

Open dependabot[bot] opened 4 days ago

dependabot[bot] commented 4 days ago

Updates the requirements on landlab, numpy, pyglet and scikit-image to permit the latest version. Updates landlab from 2.7.0 to 2.8.0

Changelog

Sourced from landlab's changelog.

2.8.0 (2024-05-12)

New Components


- Added new component :class:`~.ConcentrationTrackerForDiffusion`
  for tracking hillslope sediment properties. (`[#1662](https://github.com/landlab/landlab/issues/1662) <https://github.com/landlab/landlab/issues/1662>`_)
- Added new component :class:`~.MassWastingRunout`
  for predicting the hazard extent, sediment transport and topographic change associated with the runout of a landslide. (`[#1830](https://github.com/landlab/landlab/issues/1830) <https://github.com/landlab/landlab/issues/1830>`_)

New Features


- Fixed the Radiation component by computing fields with ASCE standard formulas, added
  increased test coverage for both field computations and standard unit testing.
  Min, max, and avg daily temp are also three optional, newly added
  user-defined arguments for the component. (`[#1755](https://github.com/landlab/landlab/issues/1755) &lt;https://github.com/landlab/landlab/issues/1755&gt;`_)
- Added a new grid type, :class:`~.IcosphereGlobalGrid` (plus underlying graph
  machinery, etc.). (`[#1808](https://github.com/landlab/landlab/issues/1808) &lt;https://github.com/landlab/landlab/issues/1808&gt;`_)
- Added a new function, calc_net_face_flux_at_cell, that computes the
  net flux of a quantity into each of a RasterModelGrid's cells. This
  function uses openmp to parallelize its calculations. (`[#1900](https://github.com/landlab/landlab/issues/1900) &lt;https://github.com/landlab/landlab/issues/1900&gt;`_)
- Added a new *vtk* writer, ``landlab.io.legacy_vtk.dump`` that is
  able to write *Landlab* grids that have three spatial coordinates.
  This function is also able to write both the main grid (*nodes* and
  *patches*) as well as the dual grid (*corners* and *cells*). (`[#1932](https://github.com/landlab/landlab/issues/1932) &lt;https://github.com/landlab/landlab/issues/1932&gt;`_)

Bug Fixes
`````````

- Fixed a bug when ordering links at patches with patches composed of varying
  numbers of links. (`[#1807](https://github.com/landlab/landlab/issues/1807) &lt;https://github.com/landlab/landlab/issues/1807&gt;`_)
- Fixed a bug where SpaceLargeScaleEroder deviates from analytical solution for mixed bedrock-alluvial river in a portion of the parameter space. (`[#1901](https://github.com/landlab/landlab/issues/1901) &lt;https://github.com/landlab/landlab/issues/1901&gt;`_)
- Fixed a bug that caused a ``ModuleNotFoundError`` for *pkg_config* on
  Python 3.12. (`[#1927](https://github.com/landlab/landlab/issues/1927) &lt;https://github.com/landlab/landlab/issues/1927&gt;`_)

Documentation Enhancements
</code></pre>
<ul>
<li>Update list of publications in USEDBY.rst. (<code>[#1928](https://github.com/landlab/landlab/issues/1928) &lt;https://github.com/landlab/landlab/issues/1928&gt;</code>_)</li>
</ul>
<p>Other Changes and Additions</p>
<pre><code>
- Removed the broken ``map_link_vector_to_nodes`` method from
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/landlab/landlab/commit/62fa4539b223b7ccefcff5c87adf7834c12265f1"><code>62fa453</code></a> Preparing release 2.8.0</li>
<li><a href="https://github.com/landlab/landlab/commit/2f9a9cdb12eba2167f63daf081d6ce25f3b57670"><code>2f9a9cd</code></a> drop windows 32bit; update cibuildwheel</li>
<li><a href="https://github.com/landlab/landlab/commit/2c900a3b1d8b38e73f2d90ce33e7e8c2d7720b8b"><code>2c900a3</code></a> Merge branch 'master' into mcflugen/prepare-for-v2.8</li>
<li><a href="https://github.com/landlab/landlab/commit/26d7662a05e5f73eb0a3ab4a8afc7dd5d8c1f8df"><code>26d7662</code></a> Merge pull request <a href="https://redirect.github.com/landlab/landlab/issues/1838">#1838</a> from landlab/gt/icosphere-grid</li>
<li><a href="https://github.com/landlab/landlab/commit/ed4a7bb45b959004089a01096d1833149c770175"><code>ed4a7bb</code></a> add a link to the docs</li>
<li><a href="https://github.com/landlab/landlab/commit/71d86e5f9eb45c4c8453c35b7d6eed5be1a51d2c"><code>71d86e5</code></a> make landlab.util.geometry a module</li>
<li><a href="https://github.com/landlab/landlab/commit/13c13a40c3beb16368f0bd151a08af3e4178b200"><code>13c13a4</code></a> remove usages of to_vtk in the notebooks</li>
<li><a href="https://github.com/landlab/landlab/commit/9bb7e7716f9fc0bc8812a524349144aed92def12"><code>9bb7e77</code></a> remove to_vtk method</li>
<li><a href="https://github.com/landlab/landlab/commit/a3c5d72c15d97a092a46fae4d453ba4317140539"><code>a3c5d72</code></a> use landlab.io.legacy_vtk functions for vtk output</li>
<li><a href="https://github.com/landlab/landlab/commit/9c5df3f453df5860e5cc68724986831da95f8883"><code>9c5df3f</code></a> add vtk.dump alongside to_vtk</li>
<li>Additional commits viewable in <a href="https://github.com/landlab/landlab/compare/v2.7.0...v2.8.0">compare view</a></li>
</ul>
</details>

<br />
Updates `numpy` from 1.26.2 to 2.0.0
Release notes

Sourced from numpy's releases.

v2.0.0

NumPy 2.0.0 Release Notes

NumPy 2.0.0 is the first major release since 2006. It is the result of 11 months of development since the last feature release and is the work of 212 contributors spread over 1078 pull requests. It contains a large number of exciting new features as well as changes to both the Python and C APIs.

This major release includes breaking changes that could not happen in a regular minor (feature) release - including an ABI break, changes to type promotion rules, and API changes which may not have been emitting deprecation warnings in 1.26.x. Key documents related to how to adapt to changes in NumPy 2.0, in addition to these release notes, include:

Highlights

Highlights of this release include:

  • New features:
    • A new variable-length string dtype, numpy.dtypes.StringDType and a new numpy.strings namespace with performant ufuncs for string operations,
    • Support for float32 and longdouble in all numpy.fft functions,
    • Support for the array API standard in the main numpy namespace.
  • Performance improvements:
    • Sorting functions sort, argsort, partition, argpartition have been accelerated through the use of the Intel x86-simd-sort and Google Highway libraries, and may see large (hardware-specific) speedups,
    • macOS Accelerate support and binary wheels for macOS >=14, with significant performance improvements for linear algebra operations on macOS, and wheels that are about 3 times smaller,
    • numpy.char fixed-length string operations have been accelerated by implementing ufuncs that also support numpy.dtypes.StringDType in addition to the fixed-length string dtypes,
    • A new tracing and introspection API, numpy.lib.introspect.opt_func_info, to determine which hardware-specific kernels are available and will be dispatched to.
    • numpy.save now uses pickle protocol version 4 for saving arrays with object dtype, which allows for pickle objects larger than 4GB and improves saving speed by about 5% for large arrays.
  • Python API improvements:

... (truncated)

Commits
  • 1d49c7f Merge pull request #26698 from charris/prepare-2.0.0
  • 2103511 DOC: Remove duplicate in author list.
  • db8030e BUG: Change cibuildwheel version [wheel build]
  • 1a68264 REL: Prepare for the NumPy 2.0.0 release [wheel build]
  • c8665ba Merge pull request #26696 from charris/backport-26582
  • 103f4dd Merge pull request #26697 from charris/backport-25963
  • c193dcd Merge pull request #26695 from charris/backport-26667
  • 8fa8191 BUG: Fix bug in numpy.pad() (#25963)
  • ece3559 BUG: weighted nanpercentile, nanquantile and multi-dim q (#26582)
  • b31e195 BUG: Adds asanyarray to start of linalg.cross (#26667)
  • Additional commits viewable in compare view

Updates `pyglet` to 2.0.15
Release notes

Sourced from pyglet's releases.

v2.0.15

Changes and Improvements

  • font: Clean up win32 legacy font renderer to remove unused or outdated code.
  • font: Boxes are now primary update method for TextLayout instead of relying on the vertex_list of the TextLayout.
  • font: More typing additions.
  • gui.widgets: Add _set_enabled hook (#1073)
  • shapes: Add missing BezierCurve thickness property.
  • graphics: Re-raise error for attributes during shader creation with better error descriptions. (#1076)
  • docs: Start adding GUI section to the programming guide.
  • typing: Add stub file for init package to workaround IDE inspection/completion issues with lazy loading modules. (#1077)
  • examples: Add more visual feedback to the Controller example

Bugfixes

  • Xaudio2: Fix missing ) to POINTER which causes XAudio2 to fail to be imported. (#1068)
  • font.caret: Fix caret positioning and moving the cursor during cursor selection. (#932)
  • input.controller: User added mappings should take higher priority over default mappings.
  • input.controller: Properly handle inverted axis as dpad (#1078)
  • shapes: Added a None check to ShapeBase.delete (#1075)
  • shapes: Fix Line being off-centered when setting thickness #1083
  • image: Fix BufferManager.get_depth_buffer() for GL3+.
Changelog

Sourced from pyglet's changelog.

pyglet 2.0.16

Changes and Improvements

  • library-wide overhaul of docstrings, and addition of type hints (#1084)

Bugfixes

  • resource: Fix indexing of directories inside of Zip files. Remove broken code for multi-part archives.
  • shapes: Add missing thickness property to Box.
  • shapes: Add missing docstrings to Arc thickness property.

pyglet 2.0.15

Changes and Improvements

  • font: Clean up win32 legacy font renderer to remove unused or outdated code.
  • font: Boxes are now primary update method for TextLayout instead of relying on the vertex_list of the TextLayout.
  • font: More typing additions.
  • gui.widgets: Add _set_enabled hook (#1073)
  • shapes: Add missing BezierCurve thickness property.
  • graphics: Re-raise error for attributes during shader creation with better error descriptions. (#1076)
  • docs: Start adding GUI section to the programming guide.
  • typing: Add stub file for init package to workaround IDE inspection/completion issues with lazy loading modules. (#1077)
  • examples: Add more visual feedback to the Controller example

Bugfixes

  • Xaudio2: Fix missing ) to POINTER which causes XAudio2 to fail to be imported. (#1068)
  • font.caret: Fix caret positioning and moving the cursor during cursor selection. (#932)
  • input.controller: User added mappings should take higher priority over default mappings.
  • input.controller: Properly handle inverted axis as dpad (#1078)
  • shapes: Added a None check to ShapeBase.delete (#1075)
  • shapes: Fix Line being off-centered when setting thickness #1083
  • image: Fix BufferManager.get_depth_buffer() for GL3+.

pyglet 2.0.14

Changes and Improvements

  • shapes: Add new MultiLine shape. (#1057)
  • font: Enhance UserDefinedFonts to allow using custom font mapping functions (#1067)
  • typing: Improve Xaudio2 COM type hints (#1062)
  • text: Raise Exception when attempting to change IncrementalTextLayout.rotation, as it's not supported.
  • tests.integration: Add simple sanity tests for creation of all Label, Document, and Layout objects.

Bugfixes

... (truncated)

Commits
  • da24128 ready v2.0.15 release
  • 0a8192d input.controller: Properly handle inverted axis as dpad (#1078)
  • bcb9a10 shapes: fix Line being off-centered when setting thickness #1083
  • 8e67905 examples.depth_sprite: Remove accidental debug code.
  • 6e4050a examples: add more visual feedback to the Controller example
  • a9186de docs: Flesh out Framebuffer docstrings.
  • e08c536 docs: Minor refactoring of Framebuffer docs.
  • a353da1 image: fix BufferManager.get_depth_buffer() for GL3+.
  • 4dbce54 Revert "image: fix BufferManager.get_depth_buffer() for GL3+."
  • e606cb6 image: fix BufferManager.get_depth_buffer() for GL3+.
  • Additional commits viewable in compare view

Updates `scikit-image` from 0.19.3 to 0.24.0
Release notes

Sourced from scikit-image's releases.

v0.24.0

scikit-image 0.24.0

We're happy to announce the release of scikit-image 0.24.0!

Highlights

  • Add new class skimage.transform.ThinPlateSplineTransform, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with skimage.transform.warp (#7040).

New Features

  • Add new class skimage.transform.ThinPlateSplineTransform, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with skimage.transform.warp (#7040).
  • Add skimage.morphology.remove_objects_by_distance, which removes labeled objects, ordered by size (default), until the remaining objects are a given distance apart (#4165).

Performance

  • In skimage.feature.corner_fast, test four directions earlier, which should more than half the computation time for most cases (#7394).

Documentation

  • Remove obsolete instruction about documenting changes (#7321).
  • Clarify description of data_range parameter in skimage.metrics.structural_similarity (#7345).
  • Update release process notes (#7402).
  • Fix typo in docstring of skimage.measure.regionprops (#7405).
  • Fix typos in skimage.measure.find_contours (#7411).
  • Add algorithmic complexity description + suggested alternatives to skimage.restoration.rolling_ball docstring (#7424).
  • Remove ineffective PR contribution clause (#7429).
  • Clarify objection period for lazy consensus in SKIP 1 (#7020).
  • Add a new gallery example "Use thin-plate splines for image warping" (#7040).
  • Add a new gallery example on "Removing objects" based on their size or distance (#4165).

Infrastructure

  • Escape user-controlled variables in GA workflow (#7415).
  • Add generation of GitHub artifact attestations to built sdist and wheels before upload to PyPI (#7427).
  • For publishing actions use the full length commit SHA (#7433).
  • Be mindful of resources by canceling in-progress workflows (#7436).
  • Add out-of-tree Pyodide builds in CI for scikit-image (#7350).

Maintenance

  • Replace deprecated nose style setup/teardown with autouse fixtures (#7343).
  • Temporarily pin macos-12 runner in CI (#7408).
  • Fix NumPy2 dtype promotion issues in pywt dependent code (#7414).
  • In skimage.util.compare_images, deprecate the parameter image2. Instead use image0, image1 to pass the compared images. Furthermore, all other parameters will be turned into keyword-only parameters once the deprecation is complete (#7322).
  • Add support back for Python 3.9 to enhance compatibility with Numpy 2 (#7412).
  • Disable ruff/pyupgrade rule UP038 (#7430).
  • Stop verifying wheel attestations temporarily (#7444).

Contributors

... (truncated)

Changelog

Sourced from scikit-image's changelog.

  • 0.24.0rc0.dev0 # development version for 0.24.0 first release candidate

Process

  • To debug building and testing wheels via CI, push to a branch named maintenance/anything.

    Once everything works as intended, remove those branches and proceed.

  • Set release variables:

    export VERSION=<version number>
    export PREVIOUS=<previous version number>
    export ORG="scikit-image"
    export REPO="scikit-image"
    

    If this is a prerelease:

    export NOTES="doc/source/release_notes/release_dev.rst"
    

    If this is release:

    export NOTES="doc/source/release_notes/release_${VERSION}.rst"
    git rm doc/source/release_notes/release_dev.rst
    
  • Autogenerate release notes:

    changelist ${ORG}/${REPO} v${PREVIOUS} main --version ${VERSION}  --out ${NOTES} --format rst
    changelist ${ORG}/${REPO} v${PREVIOUS} main --version ${VERSION}  --out ${VERSION}.md
    
  • If you want, you can review the release notes:

    • Scan the PR titles for highlights and mention these in the relevant sections of the notes. Ideally, all changed API objects are mentioned by name, e.g. a new parameter or a deprecated function.

    • Check for duplicate names in the automatically generated list of contributors and reviewers.

    • Append the release date to the title similar to previous iterations.

  • If this is a release:

    • (Only needed if you create a new branch) update the file skimage/data/_fetchers.py to point the pooch repository to the new branch instead of main during testing. Look for the parameter version_dev="main", for pooch.create and change it to the newly created branch name.

... (truncated)

Commits

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