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pritykinlab / guidescanpy

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Add a `generate_kmers` command #31

Closed vineetbansal closed 1 year ago

vineetbansal commented 1 year ago

Similar to the script in guidescan-cli repo, guidescanpy should have a guidescanpy generate_kmers command that takes in a .fna file and outputs 20-mers found in the genomic sequence.

We should discuss all the flags we need in such a command.

vineetbansal commented 1 year ago

This entails adding a command to __main__.py and a corresponding module in the commands/ subpackage.