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pritykinlab / guidescanpy

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Get snakemake ready to use #48

Closed 1rzhu closed 1 year ago

1rzhu commented 1 year ago

This branch modified the paths of snakemake output data, to make it consistent with the project. Also will add --config organism to allow preparing data by organisms.

1rzhu commented 1 year ago

The new command add-sam-tag works like guidescanpy add-sam-tag sacCer3.bam.sorted --ce -o output1.sam --output-format sam. Input and output files can be either sam or bam format.