EUR reference panel for GRChr38 to run LDpred2

privefl / bigsnpr

R package for the analysis of massive SNP arrays.

https://privefl.github.io/bigsnpr/

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Closed habraham17 closed 2 months ago

habraham17 commented 8 months ago

Hello! I was wondering if you have a EUR reference panel for GRChr38 to run LDpred2 and generate some PRS from sumstats. Thank you.

privefl commented 8 months ago

Have you looked at the tutorial? https://privefl.github.io/bigsnpr/articles/LDpred2.html There are 3 solutions presented there.

privefl commented 5 months ago

Any update on this?