Open koujiaodahan opened 4 months ago
Are you talking about the QC comparing the two estimates of SD? Yes, it is always good to check for potential errors. You can also compare AFs between your GWAS dataset and the LD reference.
Any update on this?
We run the gwas based on our WGS dataset ,so no imputation ,no INFO value. So is there no need to run the Quality Control of GWAS summary statistics?