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privefl
/
bigsnpr
R package for the analysis of massive SNP arrays.
https://privefl.github.io/bigsnpr/
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Mapping Principal Components to sample IDs
#313
AlePilHen
closed
2 years ago
2
Performance Evaluation: correlation between PRS scores and affection?
#312
fmadani
closed
2 years ago
2
Summary statistics filtration on HapMap SNPs is missing.
#311
fmadani
closed
2 years ago
4
'R session aborted - R encountered a fatal error' when adding columns to SFBM
#310
antonsysojev
closed
2 years ago
19
Unzip error when decompressing LDpred2 reference from figshare
#309
opain
closed
2 years ago
5
Effect Allele in dosage data
#308
xiaopingwu-SSI-2021
closed
2 years ago
1
Problem with snp_ldsplit() and AFR ancestry
#307
LucieTroubat
closed
2 years ago
8
Some questions of using PCA
#306
garyzhubc
closed
2 years ago
5
African LD reference
#305
rameez500
closed
2 years ago
5
How should I know what are the genotype values that are missing and drop them before the computation?
#303
garyzhubc
closed
2 years ago
6
LassoSum divergence
#302
jordanero
closed
2 years ago
2
How to subset samples by their ids?
#301
garyzhubc
closed
2 years ago
27
Questions on LDpred2 models
#300
junchcb
closed
2 years ago
9
Negative h2_init in LDpred2 auto model
#299
JulieanneKnupp
closed
2 years ago
9
Implement product that handles missing values
#298
privefl
opened
2 years ago
1
Not enough memory for loading bgen file
#297
garyzhubc
closed
2 years ago
8
Warn when there are too many missing values to impute
#296
privefl
opened
2 years ago
0
result difference between snp_ldsc and LDSC
#295
dongzhblake
closed
2 years ago
3
alternatives to SFBM matrix format
#294
williambrandler
closed
2 years ago
12
snp_ldsc ( ) : $n_eff for binary traits ?
#293
AmelLamri
closed
2 years ago
1
missing value where TRUE/FALSE needed
#292
williambrandler
closed
2 years ago
6
What is the quickest way to get list_snp_id?
#290
garyzhubc
closed
2 years ago
10
Imputation error with snp_fastImpute()
#289
Deleetdk
closed
2 years ago
7
Transpose a big genotype matrix
#288
garyzhubc
closed
2 years ago
3
Too high p parameter is okay?
#287
kkonoo
closed
2 years ago
6
estimation GPS using more than 300M SNP
#286
dkssud24
closed
2 years ago
1
I am trying to use the snp_readBGEN() function to read BGEN files. I see the below errors for different SNP lists.
#285
umakann-db
closed
2 years ago
4
Weird snp_manhattan() when data is not sorted by (chr, pos)
#284
privefl
closed
2 years ago
0
Is it possible to do PCA on SNPs instead of population?
#283
garyzhubc
closed
2 years ago
3
Subsetting SNPs from FBM
#282
JavierSchneider
closed
2 years ago
4
prepare sumstats
#281
pjordab
closed
2 years ago
18
Scale of sample_beta
#280
yidingdd
closed
2 years ago
2
bigsnpr cannot be loaded if docker container contains bgenix tool
#279
williambrandler
closed
2 years ago
6
Published LassoSum2 update equation differs from originally published LassoSum update equation
#278
jordanero
closed
2 years ago
2
Verify whether 'omp critical' is not slowing down some code
#277
privefl
opened
2 years ago
0
manually construct mhtest object to use snp_gc/snp_qq functions
#276
yangli-ai
closed
2 years ago
2
Error about 'big_prodMat'
#275
BowenTang1996
closed
2 years ago
4
update test for dplyr 1.0.8
#274
romainfrancois
closed
2 years ago
5
LDpred2 never finishes, poor RAM utilisation
#273
mkelcb
closed
2 years ago
13
Docker Available?
#272
lizlitkowski
closed
2 years ago
2
Errore: 'total_len' should have only positive values
#271
Giuseppe1995
closed
2 years ago
11
Ancestry estimation from allele frequencies
#270
privefl
closed
2 years ago
0
LD sampling
#269
elgartmi
closed
2 years ago
9
Question about "inversed PRS distribution"
#268
HasangaDM
closed
2 years ago
3
Is snp_ldsplit suitable for splitting the entire genome?
#267
garyzhubc
closed
2 years ago
2
snp_cor() error
#266
nscarene
closed
2 years ago
10
Assessing the quality of the GRS when using ldpred2-auto (unassessed phenotypes)
#264
johannfaouzi
closed
3 years ago
8
Segfault/memory not mapped/nb_cores()
#263
MatthewMaher
closed
3 years ago
8
Problem while computing LD correlation
#262
nscarene
closed
3 years ago
16
Question on using biglasso with FBM file from bigsnpr
#261
JianqiaoWang
closed
2 years ago
3
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