This package runs collective molecular dynamics simulations, where collective motions from anisotropic network model normal mode analysis drive all-atom dynamics through targeted molecular dynamics simulations and energy minimization
I tested scaling to give uniform mode amplitude and it performs less well than the original implementation with all modes scaled by the same factor to give amplitudes in proportion to their eigenvalues.
I tested scaling to give uniform mode amplitude and it performs less well than the original implementation with all modes scaled by the same factor to give amplitudes in proportion to their eigenvalues.