This package runs collective molecular dynamics simulations, where collective motions from anisotropic network model normal mode analysis drive all-atom dynamics through targeted molecular dynamics simulations and energy minimization
This would require an option to not build the system and a place to add files or data for additional parameters such as system size (see https://github.com/prody/ProDy/issues/1077).
This would require an option to not build the system and a place to add files or data for additional parameters such as system size (see https://github.com/prody/ProDy/issues/1077).