This package runs collective molecular dynamics simulations, where collective motions from anisotropic network model normal mode analysis drive all-atom dynamics through targeted molecular dynamics simulations and energy minimization
Selection should be "protein and name CA or nucleic and name P C4' C2" as in the prody anm app
We may want to keep support for coarse grained MD structures with BB nodes too, but at the moment the method doesn't really support them anyway so they should probably be removed
Selection should be "protein and name CA or nucleic and name P C4' C2" as in the prody anm app
We may want to keep support for coarse grained MD structures with BB nodes too, but at the moment the method doesn't really support them anyway so they should probably be removed