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projectglow / glow

An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
265 stars 111 forks source link

reading VCF as a streaming datasource in python #361

Open williambrandler opened 3 years ago

williambrandler commented 3 years ago

When I read VCFs as a stream in scala, it works. But the same code in python doesn't start the stream or display anything. Thoughts?

Scala: Screen Shot 2021-04-01 at 2 31 02 PM Screen Shot 2021-04-01 at 2 31 40 PM

Python: Screen Shot 2021-04-01 at 2 02 57 PM

williambrandler commented 3 years ago

I don't think this needs to be solved right now, but keeping it open until we will need it (prob later this year)