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projectglow / glow

An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
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Add VEP and Hail interoperability notebooks #379

Closed williambrandler closed 3 years ago

williambrandler commented 3 years ago

What changes are proposed in this pull request?

Add notebooks for hail interoperability and VEP with the pipe transformer. Add relevant init scripts and job definitions for testing. Update docs with html of notebooks.

How is this patch tested?

(Details)

codecov[bot] commented 3 years ago

Codecov Report

Merging #379 (e7a0157) into master (321ccea) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #379   +/-   ##
=======================================
  Coverage   93.69%   93.69%           
=======================================
  Files          95       95           
  Lines        4823     4823           
  Branches      473      473           
=======================================
  Hits         4519     4519           
  Misses        304      304

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williambrandler commented 3 years ago

I have split this PR in two (hail and VEP separately) @karenfeng, so going to close this PR and we can work on the other two