Writing VCF with FloatType in INFO field fails

projectglow / glow

An open-source toolkit for large-scale genomic analysis

https://projectglow.io

Apache License 2.0

264 stars 111 forks source link

Closed ConnorBarnhill closed 5 months ago

ConnorBarnhill commented 3 years ago

Trying to write a single VCF file (bigvcf) from a spark dataframe. I have an INFO field that's a float. Writing throws an error on the FloatType:

williambrandler commented 3 years ago

what happens if you set the validation stringency to lenient?

ConnorBarnhill commented 3 years ago

Same result

williambrandler commented 2 years ago

Was this INFO field represented in the original VCF? And has the schema changed for the INFO field?

henrydavidge commented 5 months ago

This should be resolved now