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projectglow / glow

An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
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add comparison of gwas results for hail and glow #443

Closed williambrandler closed 2 years ago

williambrandler commented 2 years ago

Signed-off-by: William Brandler William.Brandler@databricks.com

What changes are proposed in this pull request?

Add a notebook that compares GWAS on simulated variants for Hail and Glow to ensure accuracy in glow. This will go in the new benchmarks section of the docs. And be included in the nightly continuous integration test

Correlation stats: Linear regression 0.999956 Logistic regression 0.999927

How is this patch tested?

codecov[bot] commented 2 years ago

Codecov Report

Merging #443 (7eb85d1) into master (b0c3c34) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #443   +/-   ##
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  Coverage   93.63%   93.63%           
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  Files          95       95           
  Lines        4824     4824           
  Branches      466      466           
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  Hits         4517     4517           
  Misses        307      307

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