projectglow / glow

An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
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update quality control continuous integration notebooks #455

Closed williambrandler closed 2 years ago

williambrandler commented 2 years ago

Signed-off-by: William Brandler William.Brandler@databricks.com

What changes are proposed in this pull request?

Update the quality control continuous integration notebook to

  1. checkpoint each step to delta and make this explicit recommendation
  2. include variant normalization step

Partially solves https://github.com/projectglow/glow/issues/453

Next steps will be to update benchmarks notebook to show QC results split out by stage (variant splitting, normalization). Will do this in the next month or so

How is this patch tested?

(Details)

codecov[bot] commented 2 years ago

Codecov Report

Merging #455 (12bbac1) into master (484c886) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #455   +/-   ##
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  Coverage   93.63%   93.63%           
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  Files          95       95           
  Lines        4824     4824           
  Branches      466      466           
=======================================
  Hits         4517     4517           
  Misses        307      307           

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