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projectglow / glow

An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
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update liftOver notebook and add to integration test #495

Closed williambrandler closed 2 years ago

williambrandler commented 2 years ago

Signed-off-by: William Brandler william.brandler@databricks.com

What changes are proposed in this pull request?

Update the liftOver notebook to integrate it into the Glow integration test, leveraging the Glow Docker container and running after the delta_to_vcf step in the pipeline.

The Glow workflow now contains 21/36 notebooks, building on https://github.com/projectglow/glow/pull/491

How is this patch tested?

(Details)

codecov[bot] commented 2 years ago

Codecov Report

Merging #495 (13a8726) into master (b42b85e) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #495   +/-   ##
=======================================
  Coverage   93.66%   93.66%           
=======================================
  Files          95       95           
  Lines        4875     4875           
  Branches      457      457           
=======================================
  Hits         4566     4566           
  Misses        309      309

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