This pull request adds basic contamination detection. In particular, it checks for disagreement between the identified major species and some of the largest assembled contigs.
RefSeq Masher is used to identify contamination in contigs by first splitting multi-record FASTA files into single-record FASTA files.
This pull request addresses the following species identification and contamination issues:
This pull request adds basic contamination detection. In particular, it checks for disagreement between the identified major species and some of the largest assembled contigs.
RefSeq Masher is used to identify contamination in contigs by first splitting multi-record FASTA files into single-record FASTA files.
This pull request addresses the following species identification and contamination issues:
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