Merge dev/refactor into develop

proksee-project / proksee-cmd

Repo for Proksee Cmd Line Tools

Apache License 2.0

21 stars 2 forks source link

Merge dev/refactor into develop #28

Closed emarinier closed 3 years ago

emarinier commented 3 years ago

This pull request refactors much of the code in the proksee assemble pipeline.

Notes:

platform_identify.identify_reads() - this method was mainly left alone because of the complexity read_filterer - private methods were left, but cleaned up a lot