Merge dev/command_line into develop

proksee-project / proksee-cmd

Repo for Proksee Cmd Line Tools

Apache License 2.0

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Merge dev/command_line into develop #32

Closed emarinier closed 3 years ago

emarinier commented 3 years ago

This pull request adds a few command line options (specify platform, species), refactors cmd_assemble.py, and replaces passing forward and reverse reads with a single Reads object.

EDIT: Do not delete the branch after merging. Will reuse.