Input checking and sanitization

proksee-project / proksee-cmd

Repo for Proksee Cmd Line Tools

Apache License 2.0

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Open emarinier opened 1 year ago

emarinier commented 1 year ago

We should make sure all inputs are checked and sanitized correctly.

Try to prevent arbitrary code execution.
Better checking and error messages for out of range (minimum contig length, etc.)

emarinier commented 1 year ago

Update proksee/assembly_measurer.py and any other places that use subprocess.run to use the arg version instead of the string version.