/usr/bin/time -v -o 23.fa.time prophasm -i GRCh38.fna -o 23.fa -k 23
samtools faidx "23.fa"
=====================
1) Loading references
=====================
Loading GRCh38.fna
===============
2) Intersecting
===============
-1961571780 -1961571780 ...inter:0
=============
3) Assembling
=============
assembly finished (16655985 contigs)
[E::fai_build_core] Format error, unexpected "C" at line 200497
[faidx] Could not build fai index 23.fa.fai
[Tue Aug 13 16:28:25 2019]
Error in rule 2:
jobid: 0
output: 23.fa
shell:
:
Memory estimates:
Command being timed: "prophasm -i GRCh38.fna -o 23.fa -k 23"
User time (seconds): 5738.61
System time (seconds): 1615.14
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:03:11
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 93147084
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 6
Minor (reclaiming a frame) page faults: 1879671766
Voluntary context switches: 33101
Involuntary context switches: 42593
Swaps: 0
File system inputs: 6451232
File system outputs: 5712856
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Memory estimates: