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prophyle
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prophex
ProPhex – an exact k-mer index using Burrows-Wheeler Transform
MIT License
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Find kmer locations original sequence
#29
Adamtaranto
opened
1 year ago
2
Critical: ProphEx cannot be compiled on M1 (new macs)
#28
karel-brinda
opened
2 years ago
3
Add the BWA-like standard output message
#27
karel-brinda
opened
4 years ago
0
Check the following warnings
#26
karel-brinda
opened
4 years ago
0
ProPhex update
#25
karel-brinda
opened
4 years ago
0
memory fix
#24
mjsull
opened
4 years ago
1
Truncated output in case of very long reads (probably buffer overflow)
#23
karel-brinda
opened
5 years ago
1
Prophex filter
#22
salikhov-kamil
opened
6 years ago
0
bwt2fa: Segmentation fault: 11
#21
karel-brinda
opened
6 years ago
0
`k` should be an obligatory parameter for prophex klcp
#20
karel-brinda
opened
6 years ago
0
'prophex index -k' doesn't construct k-LCP
#19
karel-brinda
opened
6 years ago
0
Devel
#18
karel-brinda
closed
6 years ago
0
Paired-end reads
#17
simonepignotti
opened
6 years ago
0
Add prophex filter
#16
simonepignotti
opened
6 years ago
2
Improve index construction
#15
karel-brinda
closed
6 years ago
0
Adding a new output format
#14
karel-brinda
opened
6 years ago
4
Slow queries for human genome
#13
simonepignotti
opened
6 years ago
16
change commands
#12
salikhov-kamil
closed
6 years ago
0
Verbose bwt2fa
#11
salikhov-kamil
closed
6 years ago
0
Last char in fasta names ignored (see test A13)
#10
simonepignotti
closed
6 years ago
0
Adding version to the output of prophex
#9
karel-brinda
closed
6 years ago
0
Improvements of prophex index
#8
karel-brinda
closed
6 years ago
1
Masking repeated k-mers
#7
karel-brinda
opened
6 years ago
0
Improve README
#6
karel-brinda
closed
6 years ago
0
More verbose bwt2fa
#5
karel-brinda
closed
6 years ago
1
bwt2fa
#4
salikhov-kamil
closed
6 years ago
2
Extend readme
#3
salikhov-kamil
closed
6 years ago
3
Rename prophyle -> prophex in file names and in code
#2
salikhov-kamil
closed
6 years ago
0
Kamil/fix tests
#1
salikhov-kamil
closed
6 years ago
0