Pylint throws when used via prospector v1.8.3 via pre-commit hook

[ghost]

Describe the bug I'm trying to use the prospector 1.8.3 via pre-commit hook, but some non-linting-related pylint error appears (if I run prospector manually without pre-commit - everything works as expected)

To Reproduce Steps to reproduce the behavior:

.prospector.yaml

max-line-length: 120
ignore-paths:
  - infra/io/csv_utils.py
pylint:
  options:
    extension-pkg-whitelist:
      - dependency_injector
  disable:
    - logging-fstring-interpolation

.pre-commit-config.yaml

repos:
-   repo: https://github.com/pycqa/isort
    rev: 5.12.0
    hooks:
    -   id: isort
        name: isort (python)
-   repo: https://github.com/psf/black
    rev: 22.12.0
    hooks:
    -   id: black
-   repo: https://github.com/PyCQA/prospector
    rev: v1.8.3
    hooks:
    -   id: prospector

Call prospector the following way pre-commit run --all-files Output:

isort (python)...........................................................Passed
black....................................................................Passed
prospector...............................................................Failed
- hook id: prospector
- exit code: 1

Messages
========

.
  Line: None
    pylint: failure / Tool pylint failed to run (exception was raised, re-run prospector with -X to see the stacktrace)

inference/algorithm/supply.py
  Line: 347
    pycodestyle: E501 / line too long (286 > 120 characters) (col 121)

After adding -X to prospector params (as the error message suggests) I receive this:

Error message with -X passed

``` pre-commit run --all-files isort (python)...........................................................Passed black....................................................................Passed prospector...............................................................Failed - hook id: prospector - exit code: 1 Traceback (most recent call last): File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/prospector/run.py", line 87, in execute messages += tool.run(found_files) File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/prospector/tools/pylint/__init__.py", line 239, in run self._linter.check(self._args) File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/pylint/lint/pylinter.py", line 696, in check ast_per_fileitem = self._get_asts(fileitems, data) File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/pylint/lint/pylinter.py", line 707, in _get_asts for fileitem in fileitems: File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/pylint/lint/pylinter.py", line 874, in _iterate_file_descrs for descr in self._expand_files(files_or_modules).values(): File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/prospector/tools/pylint/linter.py", line 36, in _expand_files if not self._files.is_excluded(Path(module["path"])): TypeError: string indices must be integers The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/bin/prospector", line 8, in sys.exit(main()) File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/prospector/run.py", line 199, in main prospector.execute() File "/Users/user/.cache/pre-commit/repod28udnss/py_env-python3.8/lib/python3.8/site-packages/prospector/run.py", line 105, in execute raise FatalProspectorException(f"Tool {toolname} failed to run.") from ex prospector.exceptions.FatalProspectorException: Tool pylint failed to run. ```

Expected behavior I expect prospector to run and warn only about linting-related issues

Environment (please complete the following information):

• OS: macOS
• Tool: pylint
• Prospector version 1.8.3
• Python version 3.8.15 via conda env

Additional context pre-commit 3.0.2

[Pierre-Sassoulas]

Can you confirm the problem also exists with prospector 1.8.4 ?

[ghost]

@Pierre-Sassoulas This particular one no, but with 1.8.4 I face this one #587

[Pierre-Sassoulas]

I'm going to close in favor of #587 then.