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protegeproject / rdf-library

OWLAPI RDF library
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Broken when using with Protege 5.6.1 #12

Open LorenzBuehmann opened 1 year ago

LorenzBuehmann commented 1 year ago

This API is broken when using with Protege 5.6.1 which happens when using the SPARQL query tab because the OWL API version has been bumped

Protege: 4.5.25 this lib: 4.5.15

leads to 

java.lang.NoSuchMethodError: 'void org.semanticweb.owlapi.rdf.model.AbstractTranslator.<init>(org.semanticweb.owlapi.model.OWLOntologyManager, org.semanticweb.owlapi.model.OWLOntology, boolean, org.semanticweb.owlapi.util.IndividualAppearance, org.semanticweb.owlapi.util.AxiomAppearance, java.util.concurrent.atomic.AtomicInteger, java.util.Map)'
    at org.protege.owl.rdf.impl.RDFTranslator.<init>(RDFTranslator.java:107) ~[na:na]
    at org.protege.owl.rdf.impl.RDFTranslator.translate(RDFTranslator.java:55) ~[na:na]
    at org.protege.owl.rdf.impl.OwlTripleStoreImpl.addAxiom(OwlTripleStoreImpl.java:99) ~[na:na]
    at org.protege.owl.rdf.Utilities.loadOwlTripleStore(Utilities.java:48) ~[na:na]
    at org.protege.owl.rdf.Utilities.getOwlTripleStore(Utilities.java:32) ~[na:na]
    at org.protege.editor.owl.rdf.repository.BasicSparqlReasoner.precalculate(BasicSparqlReasoner.java:54) ~[na:na]
    at org.protege.editor.owl.rdf.SparqlQueryView.initializeReasoner(SparqlQueryView.java:34) ~[na:na]
    at org.protege.editor.owl.rdf.SparqlQueryView.initialiseOWLView(SparqlQueryView.java:24) ~[na:na]
    at org.protege.editor.owl.ui.view.AbstractOWLViewComponent.initialise(AbstractOWLViewComponent.java:43) ~[na:na]
    at org.protege.editor.core.ui.view.View.createContent(View.java:413) ~[na:na]
    at org.protege.editor.core.ui.view.View.createUI(View.java:220) ~[na:na]
    at org.protege.editor.core.ui.view.View$1.hierarchyChanged(View.java:124) ~[na:na]

Basically, the constructor of org.semanticweb.owlapi.rdf.model.AbstractTranslator has been changed, see https://github.com/owlcs/owlapi/blob/owlapi-parent-4.5.24/parsers/src/main/java/org/semanticweb/owlapi/rdf/model/AbstractTranslator.java#L289-L303

It also needs the OWLDocumentFormat now as an argument which has to be addressed in org.protege.owl.rdf.impl.RDFTranslator

anastass commented 7 months ago

Dear Support Team, I am using Protégé 5.6.3 and this feature still does not work. Are there any plans to fix this issue? Thank you!

gouttegd commented 2 months ago

This is in fact already fixed in the master branch (6c2e962), so all that needs to happen is a 3.0.1 release of rdf-library that Protégé could then use. Any chance of that happening?