Vue: Set MSA generation iterations to 0 when input is MSA

proteinevolution / Toolkit

The MPI Bioinformatics Toolkit

https://toolkit.tuebingen.mpg.de

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Vue: Set MSA generation iterations to 0 when input is MSA #919

Closed vikramalva closed 5 years ago

vikramalva commented 5 years ago

The input MSA can be in the following formats: FASTA, CLUSTAL, A3M, or STOCKHOLM. This applies to the following tools: HHpred, HMMER, HHrepID, and HHomp.

When the user goes back to using a single sequence, the default iterations should be used.

For PCOILS and DeepCoil, the input mode could be chosen based on the user input.

felixgabler commented 5 years ago

What should happen for HHpred dual sequence mode?

felixgabler commented 5 years ago

I implemented the rest of the functionality. Please test!