proteneer / timemachine

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[wip] Offline overlap-based protocol rebalancing #1385

Closed maxentile closed 1 month ago

maxentile commented 2 months ago

Currently TM has a few methods for adapting the number and spacing of lambda windows along a fixed path, depending on the setting:

This PR will extend the offline "rebalancing" functionality, with the intent of compressing the output of greedy bisection. (Motivation: bisection guarantees that the estimated overlap(lams[i], lams[i+1]) > threshold, but does not minimize len(lams).)

maxentile commented 1 month ago

Optimization approach needs work, will revisit after the more immediately usable utilities https://github.com/proteneer/timemachine/pull/1387