Pending to publish

[rolivella]

• Point peptidestability.crg.eu -> .54 (IT). @rolivella
• pps.crg.eu:
  • Dockerize Marc's website and adapt URL path. @toniher
  • PostgreSQL dump to Toni (https://github.com/proteomicsunitcrg/docs/wiki/Servers-10.102.1.26,-.25-and-.54#ppscrgeu). @rolivella
  • Landing page (plain HTML): https://github.com/proteomicsunitcrg/peptide-stability/blob/43de17e8377d7b17ec2780c9f89c0f8d60c55be0/index.html#L76
  • Enable HTTPS. @rolivella @toniher

[rolivella]

Peniding tasks:

• Dockerize Marc's website and adapt URL path. @toniher -> Done. Deploy next Tuesday 9 MAY.
• Enable HTTPS. @rolivella @toniher -> Isma has to copy the certificates to the new server.
• Validation of input AA field at: http://peptidestability.crg.eu/predict/. @zahrael97
• Why the QC section does not appear? @zahrael97
• Update http://pps.crg.eu/, Dowload all data: SupplementaryTableST1.xlsx @rolivella

[rolivella]

From Marc's pps.crg.eu:

• Remove "Proteins 16045 proteins".
• Also this:

To be done by @rolivella after pps.crg.eu dockerization

[rolivella]

QC issue:

We suspect that is the pool table. We modified this table with an old copy with this format:

peptide_protein_2=> select * from pool limit 10;
  1 | pool-001
  2 | pool-010
  3 | pool-100
  4 | pool-101
  5 | pool-102
  6 | pool-103
  7 | pool-104
  8 | pool-105
  9 | pool-106
 10 | pool-107

But we still do not see the QC peptides. The error is that it tries to connect to http://pps.crg.eu/api/pool/QC/pool-010 but it cannot and throws this message: {"message":"Not found"}.

I've found that if you put: http://pps.crg.eu/api/pool/pool-010 instead of http://pps.crg.eu/api/pool/QC/pool-010 you can find the information requested. I'm going to comment this next Tuesday with @toniher to see if we can figure out what's happening.

[rolivella]

Status update on pending tasks:

• Assessment and prediction + landing page dockerization by @toniher and @rolivella -> done!
• Enable HTTPS by @rolivella and @toniher -> done!
• Open https://peptidestability.crg.eu by Isma from CRG@sysadmin -> done!
• Fix database issue with QC peptides by @zahrael97 -> next week
• Front-end changes (@rolivella with punctual help from @toniher):
  • Remove "Proteins 16045 proteins" -> done!
  • Remove "Always down" -> done!
  • Remove "Stability area" -> done!
  • Change for "Stability" -> done!
  • Update download data -> done!
  • Icon or similar that goes to homepage -> next version?
• Nginx changes (@toniher ):
  • We should redirect http://pps.crg.eu --> https://peptidestability.crg.eu/assessment -> done!
  • Now if you put https://qsample.crg.eu you go to peptidestability.crg.eu... --> first https QSample
• Remove database from root folder.
• Do we have to document both github repos (README)?