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psathyrella / partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
GNU General Public License v3.0
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Integrate cluster size/number options #239

Closed metasoarous closed 5 years ago

metasoarous commented 7 years ago

Not sure what the option would be called, but perhaps something like --min-cluster-size?

This comes from https://github.com/matsengrp/cft/issues/183 (private repo, atm).

psathyrella commented 6 years ago

i.e. --n-final-clusters, --max-cluster-size, --small-clusters-to-ignore, --n-steps-after-which-to[...]

such that we can tell it to ignore --n-final-clusters if some of the clusters are pretty big.

psathyrella commented 5 years ago

see new (well, since july 2017) --min-largest-cluster-size option (already used in input that cft gets).