Closed scharch closed 5 years ago
Good idea.
Quick fix: copy your parameter dir, pull up all-probs.csv (full joint counts), and remove all the lines with wrong cdr3. Or, since these are the full rearrangement events, and simulation is basically just choosing lines: just delete/modify it down to the lines (exact rearrangement events) you want.
I added the functional columns to default simulation files (as described ^), I'll get to the actual cdr3 filtering somewhat, um, later.
Low priority, since I can always filter, but seems like it would be easy to implement and would save computing time for questions where it's relevant.