adding a linearham option assuming all clonal sequences

psathyrella / partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

GNU General Public License v3.0

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adding a linearham option assuming all clonal sequences #270

Closed dunleavy005 closed 5 years ago

dunleavy005 commented 5 years ago

now linearham can be run with partis annotate as well

originally: bin/partis partition --linearham --infname X --outfname Y now, we can run: bin/partis annotate --linearham --infname X --outfname Y --n-simultaneous-seqs N_SEQS