can't install the package

[ciwaya]

Hello,

I can't install the package. my R version is 2023.06.0+421 (2023.06.0+421)

I typed if (!require(EDMAinR)) { if (!require(remotes)) install.packages("remotes") remotes::install_github("psolymos/EDMAinR") } 1 yes

Then library(EDMAinR)

Error message is here Error in library(EDMAinR) : there is no package called ‘EDMAinR’

Warning messages: 1: In library(package, lib.loc = lib.loc, character.only = TRUE, ... : there is no package called ‘EDMAinR’ 2: In i.p(...) : installation of package ‘tinytex’ had non-zero exit status 3: In i.p(...) : installation of package ‘bslib’ had non-zero exit status 4: In i.p(...) : installation of package ‘shapes’ had non-zero exit status 5: In i.p(...) : installation of package ‘rmarkdown’ had non-zero exit status 6: In i.p(...) : installation of package ‘htmlwidgets’ had non-zero exit status

could you help me to solve this isuue?

[psolymos]

Please try installing this way:

install.packages('EDMAinR', 
    repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org'), 
    dependencies = TRUE)

[ciwaya]

Thank you for your reply. I got same error message.

install.packages('EDMAinR', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org'), dependencies = TRUE)

library(EDMAinR) Error in library(EDMAinR) : there is no package called ‘EDMAinR’

[psolymos]

• What system are you on? Win/Mac/Linux?
• Can you identify which package install fails? I.e. tinytex etc? I think the package doesn't get installed because one of the dependencies are missing.

[ciwaya]

I am using Mac.

I copied the warning message here. xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ERROR: compilation failed for package ‘htmltools’

• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/htmltools’
• restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/htmltools’ Warning in install.packages : installation of package ‘htmltools’ had non-zero exit status
• installing source package ‘minpack.lm’ ... package ‘minpack.lm’ successfully unpacked and MD5 sums checked using staged installation ** libs xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ERROR: compilation failed for package ‘minpack.lm’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/minpack.lm’ Warning in install.packages : installation of package ‘minpack.lm’ had non-zero exit status
• installing source package ‘xfun’ ... package ‘xfun’ successfully unpacked and MD5 sums checked using staged installation ** libs xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ERROR: compilation failed for package ‘xfun’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/xfun’
• restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/xfun’ Warning in install.packages : installation of package ‘xfun’ had non-zero exit status
• installing source package ‘ape’ ... package ‘ape’ successfully unpacked and MD5 sums checked using staged installation ** libs xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ERROR: compilation failed for package ‘ape’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/ape’ Warning in install.packages : installation of package ‘ape’ had non-zero exit status
• installing source package ‘sass’ ... package ‘sass’ successfully unpacked and MD5 sums checked using staged installation ** libs xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ERROR: compilation failed for package ‘sass’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/sass’ Warning in install.packages : installation of package ‘sass’ had non-zero exit status
• installing source package ‘tinytex’ ... package ‘tinytex’ successfully unpacked and MD5 sums checked using staged installation R inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘xfun’ 0.22 is being loaded, but >= 0.29 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted ERROR: lazy loading failed for package ‘tinytex’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tinytex’ Warning in install.packages : installation of package ‘tinytex’ had non-zero exit status ERROR: dependency ‘sass’ is not available for package ‘bslib’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/bslib’ Warning in install.packages : installation of package ‘bslib’ had non-zero exit status ERROR: dependencies ‘bslib’, ‘tinytex’ are not available for package ‘rmarkdown’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rmarkdown’ Warning in install.packages : installation of package ‘rmarkdown’ had non-zero exit status ERROR: dependency ‘rmarkdown’ is not available for package ‘htmlwidgets’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/htmlwidgets’ Warning in install.packages : installation of package ‘htmlwidgets’ had non-zero exit status ERROR: dependency ‘htmlwidgets’ is not available for package ‘rgl’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rgl’ Warning in install.packages : installation of package ‘rgl’ had non-zero exit status ERROR: dependency ‘htmlwidgets’ is not available for package ‘plotly’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/plotly’ Warning in install.packages : installation of package ‘plotly’ had non-zero exit status ERROR: dependencies ‘minpack.lm’, ‘rgl’ are not available for package ‘shapes’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/shapes’ Warning in install.packages : installation of package ‘shapes’ had non-zero exit status ERROR: dependencies ‘ape’, ‘shapes’ are not available for package ‘EDMAinR’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/EDMAinR’ Warning in install.packages : installation of package ‘EDMAinR’ had non-zero exit status

The downloaded source packages are in ‘/private/var/folders/1s/8skwndz17z344nr42cngt37r0000gn/T/RtmpOvPpEe/downloaded_packages’

[psolymos]

Have you installed xcode? See https://community.rstudio.com/t/xcrun-error-invalid-active-developer-path-library-developer-commandlinetools-missing-xcrun-at-library-developer-commandlinetools-usr-bin-xcrun-error-compilation-failed-for-package-rlang/27553/4

[ciwaya]

I did.

Still showing warning.

Warning in install.packages : unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6: cannot open URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES' Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘htmltools’ ‘sass’ ‘minpack.lm’ ‘xfun’ ‘ape’ ‘rgl’

[psolymos]

Looks like you are using R version 3.6 which is now almost 3 years old. You might want to consider upgrading R to 4.3. The warning tells you the R version for which the package index is not available (which is odd). You can also just replace the cloud.r-project.org from the repos argument with a different CRAN mirror.

[psolymos]

Were you able to load EDMAinR?

The warning says that there are no binary versions of those packages but those might have been installed from source.

[ciwaya]

Hello, I used Latest version of R studio

RStudio 2023.06.0+421 "Mountain Hydrangea" Release (583b465ecc45e60ee9de085148cd2f9741cc5214, 2023-06-05) for macOS Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2023.06.0+421 Chrome/110.0.5481.208 Electron/23.3.0 Safari/537.36

Should I use R not R studio? I can't install.

[psolymos]

Your R version is independent of RStudio, and RStudio is an IDE for R not R itself. Install R from r-project.org

[ciwaya]

Thank you very much for all your help! I installed!

[psolymos]

You are welcome.