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psszabo / SDTrimSP-GUI

A python-based graphical user interface for the ion-solid interaction code SDTrimSP
GNU General Public License v3.0
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Crash python3.8 #3

Open vesnin41 opened 1 year ago

vesnin41 commented 1 year ago

Dear Author: I have SDTrimSP_6.10 version 6.10. I launch your program and after selecting a folder, the program closes and gives an error with Python 3.8. Please tell me why this happens and how to fix it.

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x7ff818687202 pthread_kill + 10 1 libsystem_pthread.dylib 0x7ff8186beee6 pthread_kill + 263 2 libsystem_c.dylib 0x7ff8185e5b45 abort + 123 3 QtCore 0x10b64d529 qt_message_fatal(QtMsgType, QMessageLogContext const&, QString const&) + 9 4 QtCore 0x10b64ec74 QMessageLogger::fatal(char const, ...) const + 202 5 QtCore.abi3.so 0x10adc6509 pyqt5_err_print() + 745 6 QtCore.abi3.so 0x10adcc194 PyQtSlotProxy::unislot(void) + 100 7 QtCore.abi3.so 0x10adcc0fa PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void) + 58 8 QtCore 0x10b860f6e void doActivate(QObject, int, void*) + 1118 9 QtCore 0x10b86a94a QSingleShotTimer::timerEvent(QTimerEvent) + 154 10 QtCore 0x10b85885f QObject::event(QEvent) + 111 11 QtWidgets 0x10df8b9ea QApplicationPrivate::notify_helper(QObject, QEvent) + 266 12 QtWidgets 0x10df8ce11 QApplication::notify(QObject, QEvent) + 497 13 QtWidgets.abi3.so 0x10db38e06 sipQApplication::notify(QObject, QEvent) + 230 14 QtCore 0x10b82da34 QCoreApplication::notifyInternal2(QObject, QEvent) + 212 15 QtCore 0x10b89335f QTimerInfoList::activateTimers() + 991 16 libqcocoa.dylib 0x11fe378f2 QCocoaEventDispatcherPrivate::activateTimersSourceCallback(void) + 18 17 CoreFoundation 0x7ff81879af2a CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17 18 CoreFoundation 0x7ff81879aecc CFRunLoopDoSource0 + 157 19 CoreFoundation 0x7ff81879aca5 CFRunLoopDoSources0 + 217 20 CoreFoundation 0x7ff81879992f CFRunLoopRun + 916 21 CoreFoundation 0x7ff818798f31 CFRunLoopRunSpecific + 560 22 HIToolbox 0x7ff822219f3d RunCurrentEventLoopInMode + 292 23 HIToolbox 0x7ff822219d4e ReceiveNextEventCommon + 657 24 HIToolbox 0x7ff822219aa8 _BlockUntilNextEventMatchingListInModeWithFilter + 64 25 AppKit 0x7ff81b83525c _DPSNextEvent + 858 26 AppKit 0x7ff81b834106 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1214 27 AppKit 0x7ff81b826788 -[NSApplication run] + 586 28 libqcocoa.dylib 0x11fe3862f QCocoaEventDispatcher::processEvents(QFlags) + 2495 29 QtCore 0x10b829acf QEventLoop::exec(QFlags) + 431 30 QtCore 0x10b82e042 QCoreApplication::exec() + 130 31 QtWidgets.abi3.so 0x10dc2a0c2 meth_QApplicationexec(_object, _object) + 82 32 python3.8 0x10a4c7498 cfunction_call_varargs + 216 33 python3.8 0x10a4c67ed _PyObject_MakeTpCall + 173 34 python3.8 0x10a6101fc call_function + 316 35 python3.8 0x10a60cb86 _PyEval_EvalFrameDefault + 41638 36 python3.8 0x10a4c7dc8 _PyFunction_Vectorcall + 248 37 python3.8 0x10a610163 call_function + 163 38 python3.8 0x10a60ded0 _PyEval_EvalFrameDefault + 46576 39 python3.8 0x10a600cc4 _PyEval_EvalCodeWithName + 564 40 python3.8 0x10a686806 PyRun_FileExFlags + 358 41 python3.8 0x10a685f41 PyRun_SimpleFileExFlags + 577 42 python3.8 0x10a6af5af pymain_run_file + 463 43 python3.8 0x10a6aeb16 pymain_run_python + 534 44 python3.8 0x10a6ae8a5 Py_RunMain + 37 45 python3.8 0x10a6b0071 pymain_main + 49 46 python3.8 0x10a499e58 main + 56 47 dyld 0x7ff81836541f start + 1903

Thread 1: 0 libsystem_pthread.dylib 0x7ff8186babb0 start_wqthread + 0

Thread 2: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_condwait + 1242 2 libopenblas64.0.dylib 0x113a5b23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 3: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_condwait + 1242 2 libopenblas64.0.dylib 0x113a5b23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 4: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_condwait + 1242 2 libopenblas64.0.dylib 0x113a5b23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 5: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 libopenblas.0.dylib 0x12192a70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 6: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 libopenblas.0.dylib 0x12192a70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 7: 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 libopenblas.0.dylib 0x12192a70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 8:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 9:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 10:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 11:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 12:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 13:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 14:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 15:: Thread (pooled) 0 libsystem_kernel.dylib 0x7ff8186830fe __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8186bf758 _pthread_cond_wait + 1242 2 QtCore 0x10b65faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x10b65f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x10b65f69d QWaitCondition::wait(QMutex, QDeadlineTimer) + 93 5 QtCore 0x10b65bccd QThreadPoolThread::run() + 605 6 QtCore 0x10b657619 QThreadPrivate::start(void) + 329 7 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 8 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 16:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x7ff8186805c2 mach_msg2_trap + 10 1 libsystem_kernel.dylib 0x7ff81868e73d mach_msg2_internal + 78 2 libsystem_kernel.dylib 0x7ff8186875f4 mach_msg_overwrite + 692 3 libsystem_kernel.dylib 0x7ff8186808aa mach_msg + 19 4 CoreFoundation 0x7ff81879b06f CFRunLoopServiceMachPort + 145 5 CoreFoundation 0x7ff818799af0 CFRunLoopRun + 1365 6 CoreFoundation 0x7ff818798f31 CFRunLoopRunSpecific + 560 7 AppKit 0x7ff81b9953f5 _NSEventThread + 132 8 libsystem_pthread.dylib 0x7ff8186bf1d3 _pthread_start + 125 9 libsystem_pthread.dylib 0x7ff8186babd3 thread_start + 15

Thread 17: 0 libsystem_pthread.dylib 0x7ff8186babb0 start_wqthread + 0

Thread 18: 0 libsystem_pthread.dylib 0x7ff8186babb0 start_wqthread + 0

Thread 19: 0 libsystem_pthread.dylib 0x7ff8186babb0 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00007ff85bd98700 rcx: 0x00007ff7b5a63b68 rdx: 0x0000000000000000 rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007ff7b5a63b90 rsp: 0x00007ff7b5a63b68 r8: 0x00007ff85bd9fdd8 r9: 0x0000000000000000 r10: 0x0000000000000000 r11: 0x0000000000000246 r12: 0x0000000000000103 r13: 0x00007f91ae85d680 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007ff818687202 rfl: 0x0000000000000246 cr2: 0x000000010b651c90

Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133

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vesnin41 commented 1 year ago

Traceback (most recent call last): File "/Users/vladimirvesnin/development/SDTrimSP/SDTrimSP-GUI/MainWindow.py", line 123, in QTimer.singleShot(500, lambda: self.selectSDTrimSPfolder(True)) File "/Users/vladimirvesnin/development/SDTrimSP/SDTrimSP-GUI/MainWindow.py", line 385, in selectSDTrimSPfolder success = self.tryLoadSDTrimSPData() File "/Users/vladimirvesnin/development/SDTrimSP/SDTrimSP-GUI/MainWindow.py", line 429, in tryLoadSDTrimSPData if not self.elementData.tryLoadElementTable(self.preferences.SDTrimSPpath + '/tables/table1'): File "/Users/vladimirvesnin/development/SDTrimSP/SDTrimSP-GUI/ElementData.py", line 87, in tryLoadElementTable l[2:11] = [float(v) for v in l[2:11]] File "/Users/vladimirvesnin/development/SDTrimSP/SDTrimSP-GUI/ElementData.py", line 87, in l[2:11] = [float(v) for v in l[2:11]] ValueError: could not convert string to float: '0.75.0.'

psszabo commented 1 year ago

I don't have immediate access to v6.10 myself right now, but does '0.75.0.' show up in the file 'tables/table1' file somewhere?

stephen-dixon commented 10 months ago

I came across the same issue. I think this is caused by the special case to handle a missing decimal in the vaporization energy of Francium in ElementData.py (line 80-82). In v6.10 the new value in table1 for Francium is 0.75, this becomes "0.75.0" when it's modified.