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psteinb / sota_on_uncertainties

trying to obtain uncertainties from training accuracies using timm
BSD 3-Clause "New" or "Revised" License
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PeriodicWildcardError/MissingInputException for imagenette2_train #5

Closed zyzzyxdonta closed 2 years ago

zyzzyxdonta commented 2 years ago

I wrote a config for Slurm on hemera. config.txt (txt extension because GitHub 🙄)

Now if I run this:

snakemake -p --profile config/slurm/hemera imagenette2_train

I get this result:

Building DAG of jobs...
WorkflowError:
PeriodicWildcardError: The value .table in wildcard foldid is periodically repeated (00.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table.table). This would lead to an infinite recursion. To avoid this, e.g. restrict the wildcards in this rule to certain values.
MissingInputException: Missing input files for rule create_tables:
    output: /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-00.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-01.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-02.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-03.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-04.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-05.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-06.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-07.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-08.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-09.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-10.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-11.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-12.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-13.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-14.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-15.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-16.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-17.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-18.table, /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-splits/fold-19.table
    wildcards: dataset=imagenette2-320
    affected files:
        /home/pape58/Code/sota_on_uncertainties/data/imagenette2-320-all

Am I doing something wrong?

psteinb commented 2 years ago

I'll look into it. But it will take some time.

zyzzyxdonta commented 2 years ago

OK, there's no hurry 😄

psteinb commented 2 years ago

I fixed that with decda67